Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1583

Experiment: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9950 and 9951 are separated by 162 nucleotides9951 and 9952 are separated by 633 nucleotides mRNA_1582: 9950 - K01381 PEP4 saccharopepsin, at 653,441 to 655,468 9950 mRNA_1583: 9951 - HMMPfam-Mediator complex protein-PF10280, at 655,631 to 656,397 9951 mRNA_1584: 9952 - Hypothetical Protein, at 657,031 to 658,127 9952

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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654,905 - 9950 mRNA_1582 0.72 -1.8
654,910 + 9950 mRNA_1582 0.72 -1.3
655,212 - 9950 mRNA_1582 0.87 -0.7
655,494 + +0.7
655,502 + -0.7
655,505 + +0.4
655,534 + -0.7
655,718 + 9951 mRNA_1583 0.11 +0.0
656,580 - -0.3
656,861 + -1.2
657,019 + -1.5
657,253 - 9952 mRNA_1584 0.20 -1.6

Or see this region's nucleotide sequence