Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1691

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1691: 10059 - K16261 YAT yeast amino acid transporter, at 904,790 to 907,091 10059

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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903,797 + +0.8
903,957 + +0.5
904,067 - +1.0
904,067 + -0.5
904,070 - +1.7
904,075 - -0.6
904,080 + +1.6
904,082 + +0.1
904,085 - +0.2
904,085 - +0.3
904,098 + -1.0
904,101 + +0.8
904,110 - +1.8
904,110 + +0.3
904,119 + -0.4
904,123 - -0.9
904,132 + -1.1
904,150 + +0.2
904,150 - -0.9
904,151 + +0.9
904,152 + +0.5
904,157 - -1.1
904,160 + +0.2
904,166 - +0.1
904,167 + +1.3
904,167 + -0.1
904,170 - +0.3
904,171 + +0.4
904,172 - +0.5
904,175 + -0.1
904,176 - -0.7
904,177 + +1.6
904,191 + +0.7
904,193 - +0.3
904,196 + +0.9
904,213 + -1.5
904,217 + +0.2
904,228 - +1.3
904,230 - +0.7
904,233 - -0.4
904,234 - -0.6
904,234 + -0.5
904,237 - +1.0
904,239 - -1.2
904,244 + -0.7
904,273 - -0.1
904,281 - +0.6
904,299 + +0.8
904,322 + +0.6
904,372 + +0.5
904,396 + -0.4
904,405 + +0.8
904,408 + +1.9
904,423 - -0.1
904,432 - -0.5
904,439 - -0.8
904,447 - +0.0
904,448 + -1.8
904,448 + -0.6
904,454 - +1.2
904,455 - -0.0
904,462 - +0.0
904,475 - -0.4
904,478 - -1.1
904,481 + +0.8
904,503 + +0.2
904,503 + +0.2
904,521 - -0.6
904,530 + +0.0
904,537 - -1.2
904,548 + -1.4
904,549 - +0.2
904,552 - -1.2
904,553 - +0.6
904,574 - -1.1
904,576 + -2.0
904,579 + +0.4
904,592 + +0.2
904,593 - -0.5
904,594 + -0.3
904,594 - -1.4
904,594 - +1.1
904,595 + +0.3
904,603 + +1.7
904,607 - -0.7
904,653 + +0.2
904,742 - -0.1
904,744 - -0.5
904,755 - +0.3
904,915 - +1.9
904,938 + +1.8
905,021 - 10059 mRNA_1691 0.10 +0.6
905,021 - 10059 mRNA_1691 0.10 -0.2
905,039 - 10059 mRNA_1691 0.11 -0.0
905,057 + 10059 mRNA_1691 0.12 +0.4
905,076 - 10059 mRNA_1691 0.12 -0.8
905,085 + 10059 mRNA_1691 0.13 -0.0
905,089 + 10059 mRNA_1691 0.13 +0.9
905,090 + 10059 mRNA_1691 0.13 -0.6
905,097 - 10059 mRNA_1691 0.13 -0.8
905,103 + 10059 mRNA_1691 0.14 +1.7
905,215 - 10059 mRNA_1691 0.18 -1.5
905,234 + 10059 mRNA_1691 0.19 +0.1
905,259 + 10059 mRNA_1691 0.20 -0.5
905,359 + 10059 mRNA_1691 0.25 +0.3
905,363 + 10059 mRNA_1691 0.25 +0.5
905,397 + 10059 mRNA_1691 0.26 +0.6
905,500 + 10059 mRNA_1691 0.31 +0.4
905,673 - 10059 mRNA_1691 0.38 +0.3
905,676 + 10059 mRNA_1691 0.38 +0.2
905,685 + 10059 mRNA_1691 0.39 -0.2
905,798 - 10059 mRNA_1691 0.44 -0.2
905,799 + 10059 mRNA_1691 0.44 +0.3
906,411 + 10059 mRNA_1691 0.70 +0.7
906,982 + -0.1
907,134 - +0.0
907,279 + +0.5
907,439 + +3.5
907,724 + +0.6
907,743 - -0.3
907,886 + +0.4
908,047 - -0.2
908,054 + +0.6

Or see this region's nucleotide sequence