Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
26 + -0.9
27 + -0.1
28 + +0.3
31 + +0.9
31 + -0.0
41 + -0.7
66 + +0.9
72 - +0.8
72 - -0.1
93 + +0.2
104 + +1.2
105 + +0.7
108 + -0.7
120 - -1.2
128 + +0.8
135 - -1.8
136 + +0.9
136 - +0.6
137 - +0.5
137 - -1.0
138 + +0.5
139 + +0.9
141 - -0.8
150 - -1.5
151 - -0.1
155 + -1.1
155 + +2.2
156 + +0.0
158 + -1.2
173 - -0.8
175 + +1.5
180 - -0.4
215 + +0.2
220 - +1.1
234 + +0.6
254 - -0.7
283 + -0.1
304 + -0.1
322 + -0.5
324 + +0.6
427 + +0.7
453 + 10074 mRNA_1706 0.13 -0.1
465 - 10074 mRNA_1706 0.14 +1.0
482 + 10074 mRNA_1706 0.16 -1.1
493 - 10074 mRNA_1706 0.18 +1.5
647 + 10074 mRNA_1706 0.36 +1.6
683 - 10074 mRNA_1706 0.40 -0.5
809 + 10074 mRNA_1706 0.55 +1.3
842 - 10074 mRNA_1706 0.59 +0.6
844 + 10074 mRNA_1706 0.59 +0.1
848 - 10074 mRNA_1706 0.59 +0.6
902 + 10074 mRNA_1706 0.66 +0.5
949 - 10074 mRNA_1706 0.71 -1.2
949 - 10074 mRNA_1706 0.71 +0.1
950 + 10074 mRNA_1706 0.71 +0.2
974 - 10074 mRNA_1706 0.74 +0.5
1,016 + 10074 mRNA_1706 0.79 -0.7
1,065 + 10074 mRNA_1706 0.85 +0.6
1,118 + +0.7
1,142 + +0.5
1,155 + +0.6
1,272 - +0.9
1,281 + +1.1
1,573 + 10075 mRNA_1707 0.23 +1.0
1,625 + 10075 mRNA_1707 0.27 -0.4
1,625 + 10075 mRNA_1707 0.27 +1.1
1,628 + 10075 mRNA_1707 0.27 -0.3
1,646 + 10075 mRNA_1707 0.28 +1.2
1,649 - 10075 mRNA_1707 0.28 +1.0
1,680 + 10075 mRNA_1707 0.30 +0.1
1,781 + 10075 mRNA_1707 0.36 +0.4
1,926 + 10075 mRNA_1707 0.45 +3.0
1,996 + 10075 mRNA_1707 0.49 +0.7
2,005 - 10075 mRNA_1707 0.50 +0.1
2,010 - 10075 mRNA_1707 0.50 +0.4
2,033 + 10075 mRNA_1707 0.51 +0.6
2,068 + 10075 mRNA_1707 0.53 +0.7
2,076 + 10075 mRNA_1707 0.54 -1.3

Or see this region's nucleotide sequence