Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1707

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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215 + +0.2
220 - +1.1
234 + +0.6
254 - -0.7
283 + -0.1
304 + -0.1
322 + -0.5
324 + +0.6
427 + +0.7
453 + 10074 mRNA_1706 0.13 -0.1
465 - 10074 mRNA_1706 0.14 +1.0
482 + 10074 mRNA_1706 0.16 -1.1
493 - 10074 mRNA_1706 0.18 +1.5
647 + 10074 mRNA_1706 0.36 +1.6
683 - 10074 mRNA_1706 0.40 -0.5
809 + 10074 mRNA_1706 0.55 +1.3
842 - 10074 mRNA_1706 0.59 +0.6
844 + 10074 mRNA_1706 0.59 +0.1
848 - 10074 mRNA_1706 0.59 +0.6
902 + 10074 mRNA_1706 0.66 +0.5
949 - 10074 mRNA_1706 0.71 -1.2
949 - 10074 mRNA_1706 0.71 +0.1
950 + 10074 mRNA_1706 0.71 +0.2
974 - 10074 mRNA_1706 0.74 +0.5
1,016 + 10074 mRNA_1706 0.79 -0.7
1,065 + 10074 mRNA_1706 0.85 +0.6
1,118 + +0.7
1,142 + +0.5
1,155 + +0.6
1,272 - +0.9
1,281 + +1.1
1,573 + 10075 mRNA_1707 0.23 +1.0
1,625 + 10075 mRNA_1707 0.27 -0.4
1,625 + 10075 mRNA_1707 0.27 +1.1
1,628 + 10075 mRNA_1707 0.27 -0.3
1,646 + 10075 mRNA_1707 0.28 +1.2
1,649 - 10075 mRNA_1707 0.28 +1.0
1,680 + 10075 mRNA_1707 0.30 +0.1
1,781 + 10075 mRNA_1707 0.36 +0.4
1,926 + 10075 mRNA_1707 0.45 +3.0
1,996 + 10075 mRNA_1707 0.49 +0.7
2,005 - 10075 mRNA_1707 0.50 +0.1
2,010 - 10075 mRNA_1707 0.50 +0.4
2,033 + 10075 mRNA_1707 0.51 +0.6
2,068 + 10075 mRNA_1707 0.53 +0.7
2,076 + 10075 mRNA_1707 0.54 -1.3
2,209 - 10075 mRNA_1707 0.62 +0.6
2,352 + 10075 mRNA_1707 0.71 -0.9
2,449 - 10075 mRNA_1707 0.77 -0.0
2,472 - 10075 mRNA_1707 0.78 +1.0
2,475 + 10075 mRNA_1707 0.78 +1.3
2,501 + 10075 mRNA_1707 0.80 -0.4
2,923 + +2.2
3,038 - +0.8
3,062 + -0.0
3,198 - -0.4
3,200 + +0.5
3,208 + +0.7
3,333 + +0.0
3,347 - -0.7
3,348 - -0.1
3,381 + -0.2
3,459 + +0.1
3,634 - +1.4
3,791 + -0.5

Or see this region's nucleotide sequence