Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1726

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10093 and 10094 are separated by 509 nucleotides mRNA_1725: 10093 - KOG2343 Glucose-repressible protein and related proteins, at 46,697 to 49,542 10093 mRNA_1726: 10094 - BLAST Protein priA [Grifola frondosa], at 50,052 to 51,969 10094

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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49,111 + 10093 mRNA_1725 0.85 -0.2
49,429 + +0.3
49,516 - -2.7
49,581 + +1.7
49,653 + -0.1
49,738 - -2.3
49,995 + +0.1
49,999 - +0.7
50,094 + -0.5
50,176 + +0.3
50,523 - 10094 mRNA_1726 0.25 -0.3
50,543 - 10094 mRNA_1726 0.26 +0.9
50,559 - 10094 mRNA_1726 0.26 +0.8
50,850 - 10094 mRNA_1726 0.42 +1.5
50,919 + 10094 mRNA_1726 0.45 +0.9
51,152 - 10094 mRNA_1726 0.57 -1.6
51,444 - 10094 mRNA_1726 0.73 -0.6
51,546 - 10094 mRNA_1726 0.78 -1.2
51,714 - 10094 mRNA_1726 0.87 +0.3
51,718 - 10094 mRNA_1726 0.87 +0.8
51,739 - 10094 mRNA_1726 0.88 -0.6
51,750 + 10094 mRNA_1726 0.89 -0.6
51,783 + +0.0
51,879 - +1.5
51,903 + +0.7
51,906 - +0.8
52,089 + +0.3
52,168 - +1.8
52,168 + +1.3
52,194 - -0.1
52,196 - -1.2
52,198 + +1.9
52,221 + -0.8
52,228 - +0.8
52,230 - +0.7
52,234 - +0.1
52,302 - +0.3
52,336 + -1.1
52,339 + +0.9
52,339 - -0.1
52,339 - -0.2
52,342 - +2.4
52,346 + +0.8
52,364 + +2.7
52,371 + +2.9
52,400 - +0.6
52,411 + +0.4
52,414 + -0.5
52,461 + +0.5
52,492 - +0.2
52,515 - -0.4
52,524 + -0.8
52,574 + +1.7
52,576 - +0.9
52,589 + +0.7
52,618 + +0.4
52,642 - +0.8
52,685 - -1.5
52,740 + +2.0
52,772 + +0.4

Or see this region's nucleotide sequence