Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1737

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10104 and 10105 are separated by 275 nucleotides10105 and 10106 are separated by 152 nucleotides mRNA_1736: 10104 - K01593 DDC aromatic-L-amino-acid decarboxylase, at 78,147 to 80,608 10104 mRNA_1737: 10105 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 80,884 to 82,688 10105 mRNA_1738: 10106 - Hypothetical Protein, at 82,841 to 84,052 10106

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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80,622 - +0.1
80,625 - +1.1
80,669 - +0.5
80,789 + -0.8
80,790 - +1.0
80,795 - -0.6
80,803 - +1.0
80,842 + +0.5
80,970 + -0.6
81,115 + 10105 mRNA_1737 0.13 -1.2
81,237 - 10105 mRNA_1737 0.20 +0.2
81,252 + 10105 mRNA_1737 0.20 +0.1
81,257 + 10105 mRNA_1737 0.21 -0.5
81,292 + 10105 mRNA_1737 0.23 -0.2
81,735 - 10105 mRNA_1737 0.47 +1.1
81,744 + 10105 mRNA_1737 0.48 -0.9
81,747 + 10105 mRNA_1737 0.48 +0.0
81,856 + 10105 mRNA_1737 0.54 +0.2
82,256 - 10105 mRNA_1737 0.76 +1.2
82,267 - 10105 mRNA_1737 0.77 +1.9
82,282 + 10105 mRNA_1737 0.77 +0.7
82,450 + 10105 mRNA_1737 0.87 +2.0
82,632 - +0.9
82,735 - +1.0
82,875 - -0.2
83,144 - 10106 mRNA_1738 0.25 +1.3
83,298 + 10106 mRNA_1738 0.38 +0.3
83,474 + 10106 mRNA_1738 0.52 +0.2
83,488 + 10106 mRNA_1738 0.53 +2.4
83,569 - 10106 mRNA_1738 0.60 +0.1
83,653 - 10106 mRNA_1738 0.67 +0.8

Or see this region's nucleotide sequence