Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1757

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10124 and 10125 are separated by 153 nucleotides10125 and 10126 are separated by 706 nucleotides mRNA_1756: 10124 - KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A, at 124,866 to 126,194 10124 mRNA_1757: 10125 - KOG1426 FOG RCC1 domain, at 126,348 to 129,051 10125 mRNA_1758: 10126 - KOG2998 Uncharacterized conserved protein, at 129,758 to 131,068 10126

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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125,373 - 10124 mRNA_1756 0.38 +0.2
125,397 - 10124 mRNA_1756 0.40 +0.5
125,429 - 10124 mRNA_1756 0.42 -1.8
125,539 - 10124 mRNA_1756 0.51 +0.8
125,562 - 10124 mRNA_1756 0.52 +1.0
125,567 + 10124 mRNA_1756 0.53 -0.0
125,827 + 10124 mRNA_1756 0.72 -1.0
125,889 + 10124 mRNA_1756 0.77 +0.5
125,943 + 10124 mRNA_1756 0.81 +1.6
125,948 + 10124 mRNA_1756 0.81 +0.3
126,167 + +0.1
126,333 - +0.1
126,418 - +0.3
126,429 - +2.0
126,434 + +0.9
126,593 - +0.8
126,603 - -0.2
126,757 + 10125 mRNA_1757 0.15 -0.4
126,880 - 10125 mRNA_1757 0.20 +0.8
126,985 - 10125 mRNA_1757 0.24 +1.1
127,023 - 10125 mRNA_1757 0.25 +1.4
127,046 - 10125 mRNA_1757 0.26 -0.3
127,146 - 10125 mRNA_1757 0.30 +0.1
127,237 + 10125 mRNA_1757 0.33 -0.7
127,444 + 10125 mRNA_1757 0.41 -1.7
127,596 + 10125 mRNA_1757 0.46 +0.7
128,211 + 10125 mRNA_1757 0.69 +0.4
128,521 - 10125 mRNA_1757 0.80 -2.0
128,899 + -0.1
129,035 + -0.1
129,063 + -0.2
129,210 + -0.8
129,650 - -1.5
129,654 - +0.1
129,675 + +0.7
129,805 + +0.7

Or see this region's nucleotide sequence