Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1777

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10144 and 10145 are separated by 622 nucleotides10145 and 10146 are separated by 559 nucleotides mRNA_1776: 10144 - K01869 LARS, leuS leucyl-tRNA synthetase, at 177,304 to 181,065 10144 mRNA_1777: 10145 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 181,688 to 183,339 10145 mRNA_1778: 10146 - HMMPfam-Protein of unknown function (DUF3140)-PF11338, at 183,899 to 184,487 10146

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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181,300 - +1.0
181,474 - -0.0
181,615 + -2.0
181,921 - 10145 mRNA_1777 0.14 +0.0
182,215 + 10145 mRNA_1777 0.32 -1.9
182,824 + 10145 mRNA_1777 0.69 +0.7
182,967 + 10145 mRNA_1777 0.77 -0.4
182,980 + 10145 mRNA_1777 0.78 +0.8
182,998 + 10145 mRNA_1777 0.79 -2.7
183,072 - 10145 mRNA_1777 0.84 -0.3
183,082 + 10145 mRNA_1777 0.84 -0.7
183,119 - 10145 mRNA_1777 0.87 -0.7
183,358 - +0.8
183,389 - +0.5
183,406 + +0.1
183,518 - -0.0
183,576 + +2.4
183,582 + +1.0
183,690 + +1.0
183,690 + +0.9
183,703 + -0.4
183,704 - +0.6
183,807 + -0.9
183,961 + 10146 mRNA_1778 0.11 +0.2
183,977 + 10146 mRNA_1778 0.13 +0.8

Or see this region's nucleotide sequence