Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1844

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10211 and 10212 are separated by 230 nucleotides10212 and 10213 are separated by 493 nucleotides mRNA_1843: 10211 - Hypothetical Protein, at 347,522 to 353,659 10211 mRNA_1844: 10212 - K16066 ydfG 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase, at 353,890 to 355,492 10212 mRNA_1845: 10213 - K06127 COQ5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, at 355,986 to 356,917 10213

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
352,896 - 10211 mRNA_1843 0.88 -0.0
352,923 - 10211 mRNA_1843 0.88 +0.7
352,928 + 10211 mRNA_1843 0.88 -0.8
353,169 - +1.2
353,520 - +0.4
353,688 - -0.1
353,690 - +2.3
353,809 + +0.3
353,811 + -1.0
353,818 - +1.6
353,821 - +0.5
353,822 + +0.2
353,835 - +0.3
353,875 - +0.0
354,073 - 10212 mRNA_1844 0.11 -0.1
354,875 - 10212 mRNA_1844 0.61 -0.0
354,972 + 10212 mRNA_1844 0.67 -0.1
355,019 - 10212 mRNA_1844 0.70 +0.5
355,374 - +0.4
355,389 + +2.2
355,389 - +0.7
355,429 + +0.8
355,441 + -1.0
355,536 - +0.3
355,543 + +0.4
355,551 + -2.1
355,622 + +1.9

Or see this region's nucleotide sequence