Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1926

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10293 and 10294 are separated by 221 nucleotides10294 and 10295 are separated by 572 nucleotides mRNA_1925: 10293 - K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase, at 523,662 to 525,143 10293 mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525,365 to 527,827 10294 mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528,400 to 533,209 10295

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
524,589 + 10293 mRNA_1925 0.63 -0.3
524,806 + 10293 mRNA_1925 0.77 +0.7
524,885 - 10293 mRNA_1925 0.83 -0.6
525,056 - +2.7
525,189 - +0.2
525,191 + +0.3
525,205 + -0.2
525,209 - +1.5
525,217 - -0.2
525,218 - -0.3
525,219 - +0.6
525,222 - +0.3
525,227 + -0.6
525,230 - -0.6
525,232 + +1.2
525,245 - +1.1
525,245 + +0.7
525,256 + +0.8
525,260 + +1.3
525,266 + +2.0
525,267 + +0.9
525,272 + +0.1
525,272 - +0.0
525,280 - -1.4
525,297 + +0.6
525,298 - +0.3
525,322 + -2.3
525,414 + +0.6
525,871 - 10294 mRNA_1926 0.21 +1.2
526,345 - 10294 mRNA_1926 0.40 +0.3
526,544 - 10294 mRNA_1926 0.48 +0.3
526,551 + 10294 mRNA_1926 0.48 -0.9
526,743 + 10294 mRNA_1926 0.56 +1.8
527,414 + 10294 mRNA_1926 0.83 -0.2
527,439 + 10294 mRNA_1926 0.84 +0.9
527,441 - 10294 mRNA_1926 0.84 -0.4
527,463 + 10294 mRNA_1926 0.85 +0.7
527,611 - -0.4
527,732 + +0.0
527,735 - +0.1
527,742 + +1.8
527,838 - +1.0
527,851 - -0.3
527,865 - -0.0
527,869 - +1.3
527,889 - -0.6
527,894 + -0.7
527,942 - -0.5
527,945 - -0.6
528,044 - -0.6
528,070 - +0.6
528,086 + +1.2
528,349 - -3.1
528,500 + +0.3
528,597 + -0.2
528,642 - -0.1

Or see this region's nucleotide sequence