Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1930

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10297 and 10298 are separated by 346 nucleotides mRNA_1929: 10297 - K07880 RAB4B Ras-related protein Rab-4B, at 535,979 to 537,358 10297 mRNA_1930: 10298 - KOG1634 Predicted transcription factor DATF1, contains PHD and TFS2M domains, at 537,705 to 541,731 10298

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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536,770 - 10297 mRNA_1929 0.57 -0.6
536,822 + 10297 mRNA_1929 0.61 +1.6
536,956 - 10297 mRNA_1929 0.71 +1.6
537,037 - 10297 mRNA_1929 0.77 +2.3
537,205 + 10297 mRNA_1929 0.89 +0.1
537,208 + 10297 mRNA_1929 0.89 -0.3
537,332 + +0.3
537,497 - +0.6
537,497 + -0.1
537,512 - +0.8
537,584 - +1.9
537,628 - +1.6
537,630 - -0.0
537,634 + +0.2
537,638 - +0.5
537,647 - +0.9
537,648 + -0.6
537,649 - +0.2
537,653 - +0.3
537,653 + -1.2
537,655 + +0.9
537,657 - +0.2
537,666 - +0.5
537,668 + +1.3
541,657 + +0.6
541,672 + +0.6
541,701 + +1.9
541,787 + +0.3
541,804 + -1.4
541,875 + +1.5
541,910 + +0.0
541,911 - +0.3
541,912 + +0.4
541,933 + +0.6
541,964 - +0.6
541,976 + -0.2
541,987 + -0.5
542,008 + -0.3
542,070 - +0.8
542,094 - +0.9
542,105 + +0.6
542,110 - +1.0
542,111 - -0.8
542,115 + +1.8
542,132 + +0.7
542,147 - -0.3
542,148 + +0.5
542,151 - +0.2
542,227 + +1.0
542,242 - +2.1
542,249 - +0.8
542,252 - +0.7
542,261 - +0.7
542,273 + +1.6
542,295 + -0.2
542,297 + -1.4
542,324 - +0.0
542,372 + +0.2
542,375 - +0.9
542,377 + +0.2
542,384 + -2.5
542,399 - +0.8
542,403 - +0.4
542,404 + +0.5
542,407 + +0.0
542,407 - +2.2
542,408 + -0.2
542,409 + +0.6
542,410 - -1.0
542,411 - +0.9
542,414 + -1.0
542,417 - -0.7
542,417 - -0.3
542,421 + -0.0
542,424 - -0.0
542,424 - +0.6
542,426 - -0.1
542,428 - +0.6
542,428 + +0.1
542,431 + +0.6
542,446 + +0.8
542,451 + +0.6
542,452 - +0.5
542,452 - -0.0
542,454 - +1.4
542,467 - +0.8
542,470 + +0.2
542,478 - -1.0
542,484 - +0.1
542,485 - -0.7
542,485 - +0.1
542,485 - -0.8
542,497 + +1.7
542,501 - -0.4
542,506 - -0.1
542,515 + -1.0
542,520 + +1.5
542,521 + +0.8
542,522 + +1.4
542,527 - +1.4
542,530 + +1.7
542,533 + +0.5
542,538 + +1.5
542,547 - +0.8
542,548 - +1.9
542,568 + -0.1
542,582 + +0.3
542,620 - -0.2
542,631 - +0.4
542,632 + -0.3
542,642 + +0.2
542,647 - +0.5
542,647 - +2.0
542,653 - +1.5
542,654 + -2.1
542,658 - +0.8
542,662 - +0.2
542,662 - -0.4
542,663 + +0.5
542,671 - +1.0
542,672 - +0.6
542,672 - +0.7
542,672 - +0.9
542,679 - +1.4
542,680 + -0.1
542,682 + +0.5
542,686 - +0.4
542,687 - -0.3
542,688 + -0.4
542,689 + +1.1
542,692 + +1.7
542,693 + +0.5
542,703 - +0.2
542,704 + +0.5
542,705 - +0.4
542,707 + +1.8
542,708 - +1.4
542,710 - -0.4
542,731 + +0.4

Or see this region's nucleotide sequence