Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2004

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10371 and 10372 are separated by 611 nucleotides10372 and 10373 are separated by 762 nucleotides mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714,669 to 717,655 10371 mRNA_2004: 10372 - Hypothetical Protein, at 718,267 to 719,987 10372 mRNA_2005: 10373 - K08286 E2.7.11.- protein-serine/threonine kinase, at 720,750 to 723,688 10373

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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717,361 - +0.9
717,806 - +0.8
717,947 - -0.3
717,962 + +0.8
717,971 + -0.1
718,113 - -0.4
718,130 + +0.3
718,424 + +1.4
718,987 - 10372 mRNA_2004 0.42 +0.2
719,232 - 10372 mRNA_2004 0.56 +3.1
719,260 - 10372 mRNA_2004 0.58 +0.7
719,572 - 10372 mRNA_2004 0.76 +0.5
719,574 + 10372 mRNA_2004 0.76 +1.8
719,842 - +1.2
720,536 - +0.2
720,891 + -0.2

Or see this region's nucleotide sequence