Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2099

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10466 and 10467 are separated by 429 nucleotides10467 and 10468 are separated by 250 nucleotides mRNA_2098: 10466 - Hypothetical Protein, at 63,765 to 64,899 10466 mRNA_2099: 10467 - HMMPfam-PWWP domain-PF00855,SUPERFAMILY--SSF63748, at 65,329 to 67,842 10467 mRNA_2100: 10468 - K13184 DHX9 ATP-dependent RNA helicase A, at 68,093 to 72,993 10468

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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64,464 - 10466 mRNA_2098 0.62 +1.9
64,467 - 10466 mRNA_2098 0.62 -0.6
64,518 - 10466 mRNA_2098 0.66 +0.9
64,544 + 10466 mRNA_2098 0.69 +1.2
64,714 + 10466 mRNA_2098 0.84 +0.9
64,852 - -1.5
64,893 + -0.5
65,255 + +0.3
65,327 + +0.2
65,402 + +0.4
65,503 + +0.3
65,560 + +0.3
65,660 + 10467 mRNA_2099 0.13 -0.8
65,736 + 10467 mRNA_2099 0.16 -1.3
65,739 - 10467 mRNA_2099 0.16 +0.0
65,837 - 10467 mRNA_2099 0.20 +0.3
65,981 - 10467 mRNA_2099 0.26 -0.1
67,014 - 10467 mRNA_2099 0.67 -0.5
67,149 + 10467 mRNA_2099 0.72 +0.3
67,640 - -0.0
67,662 + +0.1
67,752 + +1.7
67,771 - -0.2
67,789 + +0.9
67,847 + +1.5
67,894 - +0.6
67,900 - +2.5
67,903 - -0.8
67,907 + +0.0
68,035 - -0.2
68,064 + +0.2
68,077 - -0.6
68,169 - -0.2
68,338 - +0.2

Or see this region's nucleotide sequence