Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2103

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10470 and 10471 are separated by 168 nucleotides10471 and 10472 are separated by 52 nucleotides mRNA_2102: 10470 - SUPERFAMILY--SSF53067, at 76,785 to 80,345 10470 mRNA_2103: 10471 - Hypothetical Protein, at 80,514 to 81,311 10471 mRNA_2104: 10472 - KOG0101 Molecular chaperones HSP70/HSC70, HSP70 superfamily, at 81,364 to 84,462 10472

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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79,665 + 10470 mRNA_2102 0.81 +0.3
80,131 + +0.8
80,372 + +0.7
80,794 - 10471 mRNA_2103 0.35 +2.8
80,825 - 10471 mRNA_2103 0.39 +0.6
80,825 - 10471 mRNA_2103 0.39 -0.1
80,825 - 10471 mRNA_2103 0.39 +1.5
80,960 + 10471 mRNA_2103 0.56 -0.2
80,969 + 10471 mRNA_2103 0.57 +0.5
81,096 + 10471 mRNA_2103 0.73 +0.5
81,102 - 10471 mRNA_2103 0.74 +0.9
81,107 + 10471 mRNA_2103 0.74 +0.8
81,108 - 10471 mRNA_2103 0.74 +0.0
81,111 - 10471 mRNA_2103 0.75 +3.2
81,128 + 10471 mRNA_2103 0.77 +1.0
81,138 + 10471 mRNA_2103 0.78 +0.6
81,190 + 10471 mRNA_2103 0.85 -0.1
81,450 + +0.7
81,536 + +0.3
81,772 + 10472 mRNA_2104 0.13 +0.3
81,831 - 10472 mRNA_2104 0.15 -1.5
81,838 + 10472 mRNA_2104 0.15 +0.4
81,857 - 10472 mRNA_2104 0.16 +0.4
81,909 - 10472 mRNA_2104 0.18 +0.0
81,991 - 10472 mRNA_2104 0.20 +0.0
82,022 + 10472 mRNA_2104 0.21 +0.1
82,238 + 10472 mRNA_2104 0.28 +0.4
82,255 - 10472 mRNA_2104 0.29 -0.4

Or see this region's nucleotide sequence