Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2109

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10477 and 10478 are separated by 335 nucleotides mRNA_2109: 10477 - SUPERFAMILY--SSF56112, at 98,028 to 98,739 10477 mRNA_2110: 10478 - K10277 KDM8, JMJD5 lysine-specific demethylase 8, at 99,075 to 100,834 10478

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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97,173 + +1.0
97,423 - +0.6
97,594 + +0.5
97,614 + +2.2
97,785 + -0.2
97,985 + +0.4
98,073 - -0.3
98,142 - 10477 mRNA_2109 0.16 +0.0
98,475 - 10477 mRNA_2109 0.63 +0.4
98,479 - 10477 mRNA_2109 0.63 -0.1
98,479 + 10477 mRNA_2109 0.63 +0.1
98,485 + 10477 mRNA_2109 0.64 +0.8
98,617 - 10477 mRNA_2109 0.83 +0.2
98,741 - -0.1
98,814 - -0.5
98,897 - -0.4
98,908 - +0.2
98,911 + +0.2
98,913 + -0.8
99,019 + +0.4
99,023 + -0.3
99,079 - +0.4
99,208 - +1.2
99,231 - +2.4
99,346 - 10478 mRNA_2110 0.15 -2.2

Or see this region's nucleotide sequence