Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2122

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10490 and 10491 are separated by 348 nucleotides mRNA_2122: 10490 - K00103 GULO L-gulonolactone oxidase, at 124,559 to 126,866 10490 mRNA_2123: 10491 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 127,215 to 128,574 10491

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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123,682 - +3.0
123,717 - -0.4
124,108 + -0.0
124,117 - +0.9
124,255 + +2.3
124,265 + +0.1
124,279 - -0.4
124,381 + -0.6
124,390 + +2.1
124,393 - -0.3
124,414 + -0.1
124,417 - +0.4
124,419 + +0.3
124,421 + +1.3
124,422 + -0.2
124,423 + +0.7
124,448 - +0.8
124,448 - -0.2
124,456 + +2.0
124,468 + +0.6
124,470 - -2.4
124,474 - -0.0
124,479 + -0.3
124,488 - -0.5
124,621 - +0.3
124,633 + -1.1
124,641 + +1.1
124,804 + 10490 mRNA_2122 0.11 +0.2
124,806 + 10490 mRNA_2122 0.11 +0.5
125,280 - 10490 mRNA_2122 0.31 +0.6
125,792 + 10490 mRNA_2122 0.53 +0.0
125,935 - 10490 mRNA_2122 0.60 +0.8
126,270 - 10490 mRNA_2122 0.74 +1.1
126,440 + 10490 mRNA_2122 0.81 +0.3
126,861 + -0.2
126,861 - +0.3
127,144 - -0.3
127,149 + +0.3
127,273 - -0.8
127,582 - 10491 mRNA_2123 0.27 +0.3
127,696 - 10491 mRNA_2123 0.35 -2.4
127,782 + 10491 mRNA_2123 0.42 -0.5
127,865 - 10491 mRNA_2123 0.48 +0.0

Or see this region's nucleotide sequence