Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2237

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10604 and 10605 are separated by 577 nucleotides10605 and 10606 are separated by 137 nucleotides mRNA_2236: 10604 - KOG3098 Uncharacterized conserved protein, at 432,656 to 434,707 10604 mRNA_2237: 10605 - KOG1794 N-Acetylglucosamine kinase, at 435,285 to 436,613 10605 mRNA_2238: 10606 - K20813 TDG thymine-DNA glycosylase, at 436,751 to 438,235 10606

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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434,327 - 10604 mRNA_2236 0.81 -0.6
434,454 - 10604 mRNA_2236 0.88 -1.0
434,463 + 10604 mRNA_2236 0.88 -2.0
434,577 - +0.4
434,581 - +1.4
434,653 + +1.5
434,718 + +1.8
434,739 + +0.2
434,746 - +0.5
434,757 + +0.1
434,774 + +2.3
434,775 + +0.6
434,777 + +0.7
434,798 + -0.1
434,800 - -1.2
434,808 + +0.0
434,821 + -0.8
434,822 + -1.1
434,831 + +0.6
434,838 - +0.4
434,846 - +0.2
434,850 - +0.5
434,851 + +0.2
434,863 - +0.5
434,867 - +1.4
434,871 + +0.4
434,873 + +1.4
434,874 - +0.7
434,875 - -0.2
434,877 + +1.2
434,883 - +0.3
434,886 - +2.1
434,893 - +0.3
434,898 - -0.7
434,900 - +0.6
434,902 + +0.6
434,904 - -0.0
434,910 - +0.3
434,915 + +0.7
434,921 + -1.6
434,924 - -0.8
434,925 + -1.1
434,929 - +0.2
434,929 + -0.1
434,934 - -0.2
434,935 - +1.1
434,935 + +0.8
434,936 - -0.6
434,938 - +1.0
434,942 - -1.3
434,943 - +1.9
434,947 + +0.7
434,950 - -0.7
434,953 - +1.6
434,966 + -0.0
434,989 - +0.4
434,998 - +1.0
435,070 - +0.5
435,080 + -0.1
435,095 - -0.7
435,098 - +1.3
435,407 + +0.0
435,806 - 10605 mRNA_2237 0.39 -1.0
435,972 - 10605 mRNA_2237 0.52 -0.0
435,980 - 10605 mRNA_2237 0.52 -1.9
436,074 - 10605 mRNA_2237 0.59 +0.7
436,264 + 10605 mRNA_2237 0.74 +1.5
436,511 - +0.4
436,847 - -0.3
437,220 - 10606 mRNA_2238 0.32 +0.0
437,269 + 10606 mRNA_2238 0.35 +0.7
437,398 - 10606 mRNA_2238 0.44 -1.9

Or see this region's nucleotide sequence