Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2331

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10699 and 10700 are separated by 860 nucleotides mRNA_2331: 10699 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 634,514 to 637,179 10699 mRNA_2332: 10700 - KOG1134 Uncharacterized conserved protein, at 638,040 to 641,999 10700

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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633,733 - +0.0
634,033 + -1.6
634,149 + +0.5
634,173 + +0.5
634,175 + -0.0
634,446 - -0.2
634,457 + +0.4
634,474 + +1.0
634,609 - +0.0
634,723 - +0.4
634,885 - 10699 mRNA_2331 0.14 +0.0
634,893 + 10699 mRNA_2331 0.14 +0.6
634,900 + 10699 mRNA_2331 0.14 +0.6
635,200 + 10699 mRNA_2331 0.26 -1.0
635,210 + 10699 mRNA_2331 0.26 +0.9
635,652 + 10699 mRNA_2331 0.43 +1.0
636,376 + 10699 mRNA_2331 0.70 +3.4
636,509 + 10699 mRNA_2331 0.75 +0.5
636,656 - 10699 mRNA_2331 0.80 -1.2
636,803 - 10699 mRNA_2331 0.86 +0.4
636,945 + +0.0
637,096 + +0.2
637,191 - +0.2
637,227 - +1.9
637,227 + +0.3
637,228 + +1.4
637,242 - -0.2
637,252 - -0.2
637,261 - +1.6
637,261 - -1.2
637,262 - -0.2
637,265 + -0.3
637,266 + +0.5
637,278 + +0.5
637,375 - +0.0
637,385 - -1.8
637,392 - +0.0
637,425 - -0.2
637,557 - +2.3
637,562 + +1.5
637,564 - -0.4
637,565 - +1.3
637,567 - -0.3
637,569 - +0.1
637,578 + +0.4
637,579 + -0.0
637,706 - -0.1
637,710 + -0.6
637,739 + +0.5
637,740 + -0.9
637,895 + -0.5
637,903 - -0.5
638,151 + -1.8

Or see this region's nucleotide sequence