Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2366

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10733 and 10734 are separated by 489 nucleotides10734 and 10735 are separated by 677 nucleotides mRNA_2365: 10733 - HMMPfam-C2 domain-PF00168,HMMPfam-Munc13 (mammalian uncoordinated) homology domain-PF10540,ProSiteProfiles-Munc13-homology domain 1 (MHD1) profile.-PS51258,ProSiteProfiles-Munc13-homology domain 2 (MHD2) profile.-PS51259,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 714,836 to 719,439 10733 mRNA_2366: 10734 - HMMPfam-GDP/GTP exchange factor Sec2p-PF06428,SUPERFAMILY--SSF144284, at 719,929 to 722,612 10734 mRNA_2367: 10735 - HMMPfam-Salt tolerance down-regulator-PF13945, at 723,290 to 728,071 10735

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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719,056 - -1.8
719,065 + -0.4
719,207 - -1.2
719,348 + -0.7
719,356 - -1.5
719,361 + -1.4
719,499 - +1.0
719,553 + +1.5
719,622 - +0.6
719,628 - +0.9
719,777 - -0.1
719,796 + +0.3
720,202 + 10734 mRNA_2366 0.10 +0.4
720,261 + 10734 mRNA_2366 0.12 -1.0
720,376 - 10734 mRNA_2366 0.17 +2.0
720,706 + 10734 mRNA_2366 0.29 -0.0
720,948 + 10734 mRNA_2366 0.38 +1.8
721,114 + 10734 mRNA_2366 0.44 +1.3
721,403 + 10734 mRNA_2366 0.55 +0.0
721,583 + 10734 mRNA_2366 0.62 -0.9
721,682 - 10734 mRNA_2366 0.65 +0.7
722,410 - +0.3
722,537 - -2.0
722,564 + -0.0
722,898 + +1.3
723,004 - +0.8
723,009 + -0.2
723,030 - +1.2
723,039 - -0.8

Or see this region's nucleotide sequence