Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2392

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10759 and 10760 are separated by 309 nucleotides10760 and 10761 are separated by 328 nucleotides mRNA_2391: 10759 - HMMPfam-Chaperone for protein-folding within the ER, fungal-PF10681, at 9,601 to 10,907 10759 mRNA_2392: 10760 - K10364 CAPZA capping protein (actin filament) muscle Z-line, alpha, at 11,217 to 13,113 10760 mRNA_2393: 10761 - HMMPfam-Prolyl oligopeptidase family-PF00326,HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 13,442 to 14,834 10761

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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10,972 - +0.7
10,997 + -0.4
11,312 - -0.1
11,411 + 10760 mRNA_2392 0.10 +2.1
11,569 - 10760 mRNA_2392 0.19 +0.6
11,722 - 10760 mRNA_2392 0.27 +0.5
12,138 - 10760 mRNA_2392 0.49 +0.2
12,577 + 10760 mRNA_2392 0.72 -0.1
12,586 - 10760 mRNA_2392 0.72 +1.3
12,645 - 10760 mRNA_2392 0.75 +0.8
13,021 - -0.6
13,051 + +0.3
13,126 - -0.4
13,182 + +1.0
13,359 + -1.3
13,464 + -0.5
13,491 - -0.3
13,615 + 10761 mRNA_2393 0.12 -2.6
13,619 - 10761 mRNA_2393 0.13 +0.5
13,623 + 10761 mRNA_2393 0.13 +0.3
13,740 + 10761 mRNA_2393 0.21 +0.3
13,761 + 10761 mRNA_2393 0.23 +0.3
13,834 + 10761 mRNA_2393 0.28 +2.7
14,032 - 10761 mRNA_2393 0.42 +0.5
14,088 - 10761 mRNA_2393 0.46 +1.8
14,088 - 10761 mRNA_2393 0.46 +0.2

Or see this region's nucleotide sequence