Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2419

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10786 and 10787 are separated by 113 nucleotides10787 and 10788 are separated by 278 nucleotides mRNA_2418: 10786 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 77,070 to 79,296 10786 mRNA_2419: 10787 - HMMPfam-Domain of unknown function (DUF4385)-PF14328, at 79,410 to 80,151 10787 mRNA_2420: 10788 - KOG2618 Uncharacterized conserved protein, at 80,430 to 82,352 10788

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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78,411 - 10786 mRNA_2418 0.60 +0.3
78,849 + 10786 mRNA_2418 0.80 +1.1
78,850 + 10786 mRNA_2418 0.80 -0.6
78,860 + 10786 mRNA_2418 0.80 -0.6
78,861 - 10786 mRNA_2418 0.80 +0.2
78,862 - 10786 mRNA_2418 0.80 +0.7
78,869 + 10786 mRNA_2418 0.81 -0.8
79,010 + 10786 mRNA_2418 0.87 -0.2
79,075 - +1.0
79,315 - +0.2
79,322 - +0.9
79,745 - 10787 mRNA_2419 0.45 -0.1
79,768 + 10787 mRNA_2419 0.48 +0.7
79,852 - 10787 mRNA_2419 0.60 +0.4
80,030 - 10787 mRNA_2419 0.84 +0.9
80,044 - 10787 mRNA_2419 0.85 +0.4
80,321 + -0.1
80,325 - +0.5
80,334 - +1.7
80,346 + +0.1
80,349 - +0.2
80,481 - -0.0
80,485 - -0.1
80,663 + 10788 mRNA_2420 0.12 +0.0
80,760 + 10788 mRNA_2420 0.17 +0.2
80,781 - 10788 mRNA_2420 0.18 -0.8
80,918 + 10788 mRNA_2420 0.25 +1.9
81,041 - 10788 mRNA_2420 0.32 +0.2
81,083 + 10788 mRNA_2420 0.34 +0.3

Or see this region's nucleotide sequence