Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2480

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10847 and 10848 are separated by 77 nucleotides10848 and 10849 are separated by 329 nucleotides mRNA_2479: 10847 - Hypothetical Protein, at 246,856 to 249,133 10847 mRNA_2480: 10848 - KOG0907 Thioredoxin, at 249,211 to 249,707 10848 mRNA_2481: 10849 - Hypothetical Protein, at 250,037 to 250,801 10849

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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248,277 - 10847 mRNA_2479 0.62 -1.0
248,303 + 10847 mRNA_2479 0.64 +0.6
248,379 - 10847 mRNA_2479 0.67 +0.7
248,746 + 10847 mRNA_2479 0.83 +0.7
249,000 + +1.2
249,276 - 10848 mRNA_2480 0.13 +0.6
249,293 - 10848 mRNA_2480 0.16 +0.1
249,423 - 10848 mRNA_2480 0.43 +1.1
249,719 + +0.1
249,864 - +0.5
249,869 + +1.8
249,874 - -0.1
249,885 + +0.2
250,016 + -1.5
250,042 - +0.8
250,049 - +1.5
250,054 + +0.2
250,085 - +0.7
250,100 + +0.1
250,108 + +0.3
250,253 - 10849 mRNA_2481 0.28 -0.7
250,428 - 10849 mRNA_2481 0.51 +0.1
250,597 + 10849 mRNA_2481 0.73 +1.5
250,649 + 10849 mRNA_2481 0.80 -0.2

Or see this region's nucleotide sequence