Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2488

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10856 and 10857 are separated by 393 nucleotides mRNA_2488: 10856 - KOG1804 RNA helicase, at 267,770 to 269,827 10856 mRNA_2489: 10857 - HMMPfam-Surfeit locus protein 5 subunit 22 of Mediator complex-PF06179, at 270,221 to 270,948 10857

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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266,850 - +1.8
267,068 - -2.1
267,476 - +0.0
267,563 + +0.2
267,860 - -0.0
267,971 - +1.6
268,107 + 10856 mRNA_2488 0.16 +0.6
268,244 - 10856 mRNA_2488 0.23 +0.4
268,515 - 10856 mRNA_2488 0.36 +0.0
268,562 + 10856 mRNA_2488 0.38 -0.2
268,568 - 10856 mRNA_2488 0.39 +2.1
268,869 - 10856 mRNA_2488 0.53 -2.1
268,969 - 10856 mRNA_2488 0.58 +1.1
268,997 - 10856 mRNA_2488 0.60 +1.9
269,100 + 10856 mRNA_2488 0.65 +0.1
269,225 - 10856 mRNA_2488 0.71 -0.5
269,389 + 10856 mRNA_2488 0.79 +1.1
269,405 - 10856 mRNA_2488 0.79 +1.4
269,485 + 10856 mRNA_2488 0.83 -0.8
269,537 - 10856 mRNA_2488 0.86 -1.3
269,823 + -0.4
269,829 - +1.5
269,833 + +0.2
269,888 + -0.3
270,107 - +2.1
270,182 + -0.7

Or see this region's nucleotide sequence