Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2493

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10860 and 10861 are separated by 891 nucleotides10861 and 10862 are separated by 545 nucleotides mRNA_2492: 10860 - HMMPfam-Rsm1-like-PF08600, at 277,761 to 278,480 10860 mRNA_2493: 10861 - KOG3098 Uncharacterized conserved protein, at 279,372 to 281,338 10861 mRNA_2494: 10862 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 281,884 to 283,232 10862

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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278,567 + -0.2
278,808 - -0.0
278,987 + +0.4
279,102 - -0.4
279,104 - +0.8
279,258 - +1.2
279,283 + +1.8
279,386 - +2.3
279,397 - +1.2
279,406 + +0.2
279,409 - -0.2
279,556 + -0.9
279,581 + 10861 mRNA_2493 0.11 +0.9
279,589 - 10861 mRNA_2493 0.11 +0.3
279,826 - 10861 mRNA_2493 0.23 +1.8
279,853 + 10861 mRNA_2493 0.24 +2.7
279,858 + 10861 mRNA_2493 0.25 -0.3
279,980 - 10861 mRNA_2493 0.31 -0.0
280,001 - 10861 mRNA_2493 0.32 -0.2
280,135 - 10861 mRNA_2493 0.39 -0.0
280,418 - 10861 mRNA_2493 0.53 +1.5
280,552 + 10861 mRNA_2493 0.60 +1.5
280,686 + 10861 mRNA_2493 0.67 -0.7
280,689 - 10861 mRNA_2493 0.67 -0.3
280,690 - 10861 mRNA_2493 0.67 +2.4
280,709 + 10861 mRNA_2493 0.68 +0.4
280,728 - 10861 mRNA_2493 0.69 -1.5
280,729 + 10861 mRNA_2493 0.69 +1.6
280,764 + 10861 mRNA_2493 0.71 +0.1
280,869 - 10861 mRNA_2493 0.76 +1.9
280,870 - 10861 mRNA_2493 0.76 -0.5
280,881 + 10861 mRNA_2493 0.77 +1.4
281,145 + +0.8
281,184 + +1.2
281,300 - -0.0
281,350 - +0.8
281,457 + +0.9
281,461 + -0.5
281,472 - +2.3
281,596 - -0.2
281,599 - -0.9
281,602 + -0.7
281,603 - +1.4
281,610 + +0.2
281,623 - +0.7
281,627 + +0.7
281,635 - +3.0
281,772 - +0.1
281,792 + +0.4
282,024 - 10862 mRNA_2494 0.10 +2.0
282,035 - 10862 mRNA_2494 0.11 -1.9
282,052 + 10862 mRNA_2494 0.12 +0.1
282,207 + 10862 mRNA_2494 0.24 -0.1

Or see this region's nucleotide sequence