Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2522

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10889 and 10890 are separated by 154 nucleotides10890 and 10891 are separated by 880 nucleotides mRNA_2521: 10889 - BLAST beta-glucosidase 1 precursor [Aspergillus rambellii], at 346,896 to 348,680 10889 mRNA_2522: 10890 - BLAST GPI ethanolamine phosphate transferase 2 [Talaromyces..., at 348,835 to 350,135 10890 mRNA_2523: 10891 - Hypothetical Protein, at 351,016 to 351,939 10891

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
348,269 - 10889 mRNA_2521 0.77 +0.6
348,617 + +0.7
348,680 + +1.2
348,709 + -1.4
348,713 - +0.4
348,724 - +0.3
348,747 - +1.5
348,748 + -1.8
348,748 + +1.9
348,749 + +0.4
348,752 + +0.3
348,763 - -1.0
348,776 + -0.2
348,778 - +1.8
348,805 + +2.5
348,841 + +0.2
348,855 + +1.1
348,857 - -0.1
348,859 - +0.1
348,860 + +1.1
348,864 + +0.2
348,866 - -0.0
348,868 - -0.2
348,869 + -1.5
348,869 + -0.3
348,894 - -1.6
348,896 - +0.4
348,900 + +0.7
348,901 + -0.4
348,902 + -0.1
348,904 + -0.5
348,931 + -2.7
348,991 - 10890 mRNA_2522 0.12 +0.7
348,998 - 10890 mRNA_2522 0.13 +0.0
349,012 - 10890 mRNA_2522 0.14 +0.7
349,012 - 10890 mRNA_2522 0.14 +0.0
349,023 - 10890 mRNA_2522 0.14 +0.2
349,031 - 10890 mRNA_2522 0.15 +0.9
349,044 + 10890 mRNA_2522 0.16 +2.5
349,068 - 10890 mRNA_2522 0.18 -0.9
349,181 + 10890 mRNA_2522 0.27 +1.7
349,208 - 10890 mRNA_2522 0.29 -0.5
349,210 + 10890 mRNA_2522 0.29 +0.6
349,380 + 10890 mRNA_2522 0.42 +0.2
349,512 + 10890 mRNA_2522 0.52 -0.2
349,627 - 10890 mRNA_2522 0.61 -1.4
349,913 + 10890 mRNA_2522 0.83 -2.5
349,931 - 10890 mRNA_2522 0.84 -0.2
349,936 + 10890 mRNA_2522 0.85 -0.4
350,418 + -2.1
350,591 + -0.3
350,629 - +1.2
350,686 + +0.3
350,951 - -1.2

Or see this region's nucleotide sequence