Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2526

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10893 and 10894 are separated by 601 nucleotides mRNA_2525: 10893 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 354,865 to 358,254 10893 mRNA_2526: 10894 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 358,856 to 360,952 10894

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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358,009 - -0.5
358,013 - +0.8
358,021 - +0.4
358,046 + +1.2
358,144 - +0.7
358,213 + +1.6
358,307 - +1.0
358,336 + +1.2
358,384 + -0.5
358,387 - +1.0
358,447 + +0.5
358,462 - +0.9
358,530 - +0.7
358,577 + -0.6
358,593 + -0.3
358,599 - +0.8
358,613 - +1.2
358,653 - -0.3
358,680 + -0.0
358,692 - +0.1
358,766 - +0.0
358,994 + -0.0
359,140 - 10894 mRNA_2526 0.14 -0.2
359,216 + 10894 mRNA_2526 0.17 -0.3
359,547 + 10894 mRNA_2526 0.33 +1.8
359,648 + 10894 mRNA_2526 0.38 +2.3
359,651 + 10894 mRNA_2526 0.38 +0.6
359,831 + 10894 mRNA_2526 0.46 +0.4
359,835 + 10894 mRNA_2526 0.47 +0.4
359,900 - 10894 mRNA_2526 0.50 +0.6
359,907 - 10894 mRNA_2526 0.50 +0.8
359,907 - 10894 mRNA_2526 0.50 +0.6
359,962 - 10894 mRNA_2526 0.53 +0.7
359,964 + 10894 mRNA_2526 0.53 -1.2
359,996 + 10894 mRNA_2526 0.54 +0.3
360,074 - 10894 mRNA_2526 0.58 +0.5
360,082 - 10894 mRNA_2526 0.58 +0.2
360,176 - 10894 mRNA_2526 0.63 +0.6
360,261 + 10894 mRNA_2526 0.67 +0.9
360,275 - 10894 mRNA_2526 0.68 +0.8
360,379 + 10894 mRNA_2526 0.73 +1.3
360,381 - 10894 mRNA_2526 0.73 -1.1
361,318 - -0.5
361,587 + +3.1
361,946 + -0.1

Or see this region's nucleotide sequence