Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2527

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10895 and 10896 are separated by 385 nucleotides mRNA_2527: 10895 - BLAST protein DGCR14-like [Mucor ambiguus], at 363,824 to 364,696 10895 mRNA_2528: 10896 - HMMPfam-Fungal chitosanase of glycosyl hydrolase group 75-PF07335, at 365,082 to 366,780 10896

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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363,014 + +0.5
363,019 + +0.3
363,038 + -2.8
363,160 - +0.9
363,202 - +0.9
363,203 - -0.2
363,205 + -0.8
363,209 + +1.6
363,215 - -0.3
363,232 + -0.1
363,288 + +1.1
363,520 + -1.3
363,586 + +1.0
363,658 + +0.3
363,691 - +0.8
363,938 - 10895 mRNA_2527 0.13 +2.0
363,941 + 10895 mRNA_2527 0.13 +1.0
364,197 - 10895 mRNA_2527 0.43 -0.9
364,236 - 10895 mRNA_2527 0.47 +1.0
364,249 + 10895 mRNA_2527 0.49 +1.2
364,801 + +1.0
365,106 + -0.1
365,272 + 10896 mRNA_2528 0.11 -0.7

Or see this region's nucleotide sequence