Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2585

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10952 and 10953 are separated by 738 nucleotides10953 and 10954 are separated by 93 nucleotides mRNA_2584: 10952 - K12350 SMPD1, ASM sphingomyelin phosphodiesterase, at 499,644 to 502,553 10952 mRNA_2585: 10953 - K18167 SDHAF1 succinate dehydrogenase assembly factor 1, at 503,292 to 503,677 10953 mRNA_2586: 10954 - K05765 CFL cofilin, at 503,771 to 504,788 10954

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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502,309 - -0.5
502,316 + +1.6
502,317 + +0.6
502,379 + +0.4
502,392 - +0.5
502,460 + -0.3
502,559 + +0.2
502,662 - -0.2
502,722 + -0.6
502,840 - +0.9
502,840 - +1.5
502,840 - +0.3
502,844 - +1.0
503,258 - -0.2
503,276 + -1.4
503,402 - 10953 mRNA_2585 0.28 +1.5
503,418 + 10953 mRNA_2585 0.33 +0.2
503,691 - +0.0
503,696 - -0.1

Or see this region's nucleotide sequence