Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2637

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11004 and 11005 are separated by 179 nucleotides11005 and 11006 are separated by 276 nucleotides mRNA_2636: 11004 - K01303 APEH acylaminoacyl-peptidase, at 646,481 to 649,252 11004 mRNA_2637: 11005 - HMMPfam-Sulphur transport-PF04143,HMMPfam-Domain of unknown function (DUF4341)-PF14241, at 649,432 to 650,669 11005 mRNA_2638: 11006 - SMART-heat shock factor-SM00415, at 650,946 to 653,673 11006

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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648,551 - 11004 mRNA_2636 0.75 +0.6
648,577 + 11004 mRNA_2636 0.76 +2.4
648,583 - 11004 mRNA_2636 0.76 -0.3
648,664 + 11004 mRNA_2636 0.79 +0.6
648,710 - 11004 mRNA_2636 0.80 +1.1
648,715 + 11004 mRNA_2636 0.81 +1.4
648,995 - +0.1
649,000 - -0.1
649,005 - +0.7
649,031 + +0.4
649,124 - -0.3
649,157 + +0.6
649,157 + -1.8
649,206 + +0.1
649,319 + +1.1
649,335 + -0.3
649,340 + +0.9
649,340 - +0.1
649,342 - +1.1
649,358 + -0.1
649,372 + +1.1
649,384 + -0.6
649,531 + +0.1
649,625 - 11005 mRNA_2637 0.16 +0.1
649,629 + 11005 mRNA_2637 0.16 +1.6
649,756 - 11005 mRNA_2637 0.26 -0.6
649,777 - 11005 mRNA_2637 0.28 +0.3
649,781 + 11005 mRNA_2637 0.28 +0.7
649,786 + 11005 mRNA_2637 0.29 +0.0
649,794 + 11005 mRNA_2637 0.29 -0.1
649,951 - 11005 mRNA_2637 0.42 +0.0
650,041 - 11005 mRNA_2637 0.49 +2.1
650,060 - 11005 mRNA_2637 0.51 -0.2
650,181 - 11005 mRNA_2637 0.61 +0.9
650,228 - 11005 mRNA_2637 0.64 +2.1
650,301 + 11005 mRNA_2637 0.70 +0.2
650,561 - +0.3
650,687 + +1.5
650,963 + +1.1
651,109 - +0.2
651,109 + -0.4
651,243 - 11006 mRNA_2638 0.11 +1.5
651,295 - 11006 mRNA_2638 0.13 +1.1
651,403 - 11006 mRNA_2638 0.17 -0.5
651,403 - 11006 mRNA_2638 0.17 +0.8

Or see this region's nucleotide sequence