Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2658

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11025 and 11026 are separated by 265 nucleotides11026 and 11027 are separated by 69 nucleotides mRNA_2657: 11025 - K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit, at 695,645 to 696,729 11025 mRNA_2658: 11026 - BLAST transmembrane amino acid transporter protein [Rhizoct..., at 696,995 to 699,580 11026 mRNA_2659: 11027 - Hypothetical Protein, at 699,650 to 700,523 11027

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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696,754 + -1.9
696,768 + -0.9
696,771 + +0.5
696,772 + +0.9
696,781 + +0.8
696,792 + +0.3
696,794 - -0.0
696,910 + +0.4
697,087 + -0.3
697,229 + -2.0
697,374 + 11026 mRNA_2658 0.15 -0.8
697,404 - 11026 mRNA_2658 0.16 +1.3
697,900 + 11026 mRNA_2658 0.35 +1.1
698,099 + 11026 mRNA_2658 0.43 -0.4
698,102 - 11026 mRNA_2658 0.43 -0.4
698,108 - 11026 mRNA_2658 0.43 -1.5
698,914 - 11026 mRNA_2658 0.74 -1.2
699,258 - 11026 mRNA_2658 0.88 +1.1
699,387 - +2.4
699,531 + -0.3
699,737 + -0.6
699,747 - 11027 mRNA_2659 0.11 +0.1
699,831 - 11027 mRNA_2659 0.21 +1.5
699,931 + 11027 mRNA_2659 0.32 -0.1
699,933 - 11027 mRNA_2659 0.32 -1.2
699,973 + 11027 mRNA_2659 0.37 +0.3
700,124 - 11027 mRNA_2659 0.54 +0.3
700,125 + 11027 mRNA_2659 0.54 -0.4
700,259 + 11027 mRNA_2659 0.70 +0.4
700,399 - 11027 mRNA_2659 0.86 +0.8
700,410 - 11027 mRNA_2659 0.87 -0.5
700,552 + +1.0
700,554 - +1.0
700,569 + -1.1
700,572 - +1.1

Or see this region's nucleotide sequence