Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2689

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11056 and 11057 are separated by 264 nucleotides mRNA_2688: 11056 - Hypothetical Protein, at 8,682 to 9,968 11056 mRNA_2689: 11057 - K07422 CYP2U1 cytochrome P450, family 2, subfamily U, polypeptide 1, at 10,233 to 12,338 11057

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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9,677 - 11056 mRNA_2688 0.77 +0.7
9,797 - 11056 mRNA_2688 0.87 +1.5
9,923 + +1.9
10,066 + +0.5
10,122 + +2.5
10,352 - +1.0
10,613 - 11057 mRNA_2689 0.18 -0.4
10,676 + 11057 mRNA_2689 0.21 -0.5
10,948 + 11057 mRNA_2689 0.34 -0.3
10,955 + 11057 mRNA_2689 0.34 -0.0
10,955 + 11057 mRNA_2689 0.34 +2.2
10,955 + 11057 mRNA_2689 0.34 +0.1
11,175 - 11057 mRNA_2689 0.45 -0.6
11,213 - 11057 mRNA_2689 0.47 +2.1
11,248 - 11057 mRNA_2689 0.48 -0.3
11,374 + 11057 mRNA_2689 0.54 -0.6
11,433 - 11057 mRNA_2689 0.57 +1.2
11,536 + 11057 mRNA_2689 0.62 +1.2
11,554 + 11057 mRNA_2689 0.63 +0.1
11,733 + 11057 mRNA_2689 0.71 +0.6
11,734 + 11057 mRNA_2689 0.71 +0.1
11,792 + 11057 mRNA_2689 0.74 -1.0
11,847 - 11057 mRNA_2689 0.77 +0.5
11,848 + 11057 mRNA_2689 0.77 +0.1
11,960 + 11057 mRNA_2689 0.82 +0.6
12,147 + +0.1
12,260 - -1.6
12,300 - +0.7
12,308 + -1.5
12,338 + +2.8
12,402 + +0.6
12,411 - -0.1
12,416 + -2.1
12,438 + -0.9
12,445 + +0.7
12,446 - +0.6
12,447 + -0.9
12,454 + +0.6
12,457 + +0.3
12,492 - +2.3
12,548 - +0.3
12,631 + +0.9
12,650 - -1.5
12,895 + -1.3
13,053 - +1.0
13,057 - +0.1
13,068 + +0.4
13,229 + +0.9
13,313 + -0.7

Or see this region's nucleotide sequence