Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2740

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11107 and 11108 are separated by 892 nucleotides11108 and 11109 are separated by 326 nucleotides mRNA_2739: 11107 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 109,775 to 112,160 11107 mRNA_2740: 11108 - HMMPfam-SUR7/PalI family-PF06687, at 113,053 to 114,206 11108 mRNA_2741: 11109 - HMMPfam-Telomeric single stranded DNA binding POT1/CDC13-PF02765,SUPERFAMILY--SSF50249, at 114,533 to 117,473 11109

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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112,067 - +0.6
112,069 - +0.5
112,241 - +0.9
112,242 + +0.8
112,251 - +1.9
112,256 + +1.0
112,257 - -0.2
112,333 + +0.8
112,402 + +0.8
112,465 - +1.2
112,601 - -1.1
112,623 - +1.9
112,630 + -0.1
112,638 + +1.5
112,647 + -0.0
112,649 + +0.6
112,709 - -0.5
112,717 + +0.2
112,745 - -0.4
112,782 - -1.5
112,785 - -0.4
112,789 - -0.3
112,789 - -0.5
112,800 + -0.7
112,805 - +0.8
112,807 + -0.7
112,807 - +2.3
112,808 - +0.2
112,809 - +2.5
112,814 + +0.4
112,814 - -0.6
112,817 - -0.2
112,817 + -2.8
112,830 + -0.1
112,840 + -0.6
112,842 + +0.4
112,852 - +2.0
112,852 + +1.2
112,855 + +0.4
112,855 + -0.2
112,971 + +0.1
112,975 + -0.8
112,982 - -0.3
112,985 - -0.1
112,987 + -0.8
112,997 + -0.2
112,997 - +0.3
113,005 - +0.7
113,112 + +0.3
113,123 + -1.7
113,124 - -0.3
113,132 + +0.4
113,149 + +0.6
113,173 + 11108 mRNA_2740 0.10 -0.7
113,471 + 11108 mRNA_2740 0.36 +1.2
113,726 - 11108 mRNA_2740 0.58 -0.6
114,001 + 11108 mRNA_2740 0.82 -0.8
114,005 - 11108 mRNA_2740 0.82 -0.6
114,344 + +2.7
114,423 + +0.0
114,528 + +1.2
114,935 - 11109 mRNA_2741 0.14 +0.9

Or see this region's nucleotide sequence