Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2747

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11114 and 11115 are separated by 468 nucleotides mRNA_2746: 11114 - K00859 coaE dephospho-CoA kinase, at 127,700 to 128,562 11114 mRNA_2747: 11115 - Hypothetical Protein, at 129,031 to 129,720 11115

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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128,621 - +0.8
128,627 - +1.5
128,633 - -0.1
128,655 + +0.2
128,769 - +0.8
128,774 + +0.3
128,778 - +0.8
128,798 - +0.6
129,051 - -0.7
129,059 - +0.9
129,062 + +1.7
129,192 + 11115 mRNA_2747 0.23 -1.0
129,231 + 11115 mRNA_2747 0.29 +0.4
129,344 - 11115 mRNA_2747 0.45 -0.0
129,360 + 11115 mRNA_2747 0.48 +1.6
129,382 + 11115 mRNA_2747 0.51 +0.8
129,605 + 11115 mRNA_2747 0.83 -1.2
129,626 - 11115 mRNA_2747 0.86 +0.6
129,641 - 11115 mRNA_2747 0.88 +0.1
129,652 + +1.4
129,677 - +1.5
129,757 + +2.1
129,802 - -0.6
129,811 + -0.4
129,824 + +0.7
129,833 - +0.8
129,861 + +1.1
129,881 - +0.5
129,895 - +0.0
129,897 - -0.6
129,902 - -0.5
129,902 + -0.1
129,917 - +0.2
129,918 + +0.1
129,921 - -0.7
129,923 - +1.3
129,930 + +0.4
129,932 + +0.6
129,940 - +0.5
129,943 + -0.8
129,958 - -0.0
129,965 - -0.4
129,984 - +1.1
129,989 + -0.2
129,993 + +0.0
130,002 + -0.4
130,009 + +1.7
130,023 + +1.1
130,037 - +0.6
130,084 + +0.4
130,247 - +0.6
130,392 + -0.1
130,540 + +1.0
130,549 + -1.6
130,555 + -0.2
130,688 + +1.2
130,701 + -0.2
130,706 - -0.3
130,712 + +0.9
130,719 + -2.8

Or see this region's nucleotide sequence