Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2796

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11163 and 11164 are separated by 311 nucleotides11164 and 11165 are separated by 241 nucleotides11165 and 11166 are separated by 328 nucleotides mRNA_2795: 11163 - SUPERFAMILY--SSF56112, at 233,342 to 236,388 11163 mRNA_2796: 11164 - K08286 E2.7.11.- protein-serine/threonine kinase, at 236,700 to 240,335 11164 mRNA_2797: 11165 - HMMPfam-CBP4-PF07960, at 240,577 to 240,997 11165 mRNA_2798: 11166 - K03537 POP5 ribonuclease P/MRP protein subunit POP5, at 241,326 to 242,097 11166

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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235,713 + 11163 mRNA_2795 0.78 -3.5
235,775 + 11163 mRNA_2795 0.80 +1.2
235,822 + 11163 mRNA_2795 0.81 +2.3
235,860 + 11163 mRNA_2795 0.83 +0.2
236,129 + +0.4
236,291 + +1.0
236,302 - +1.0
236,326 + +1.0
236,487 + +1.6
236,589 + +2.6
236,604 + +2.6
236,621 - +0.7
239,390 - 11164 mRNA_2796 0.74 -0.1
240,048 - +1.0
240,172 + +1.7
240,245 + +1.7
240,377 + +1.6
240,518 - +0.7
240,527 + +0.5
240,657 - 11165 mRNA_2797 0.19 -0.9
240,664 + 11165 mRNA_2797 0.21 +0.8
240,794 - 11165 mRNA_2797 0.52 +0.2
240,820 - 11165 mRNA_2797 0.58 +1.2
240,840 + 11165 mRNA_2797 0.62 +0.4
240,956 - -0.2
241,121 - +0.7
241,268 - -0.3

Or see this region's nucleotide sequence