Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2804

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11171 and 11172 are separated by 735 nucleotides11172 and 11173 are separated by 373 nucleotides mRNA_2803: 11171 - K01301 NAALAD N-acetylated-alpha-linked acidic dipeptidase, at 253,457 to 256,700 11171 mRNA_2804: 11172 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 257,436 to 258,912 11172 mRNA_2805: 11173 - KOG0128 RNA-binding protein SART3 (RRM superfamily), at 259,286 to 263,641 11173

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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256,596 - -0.6
256,602 - -0.1
256,603 - +0.6
256,615 - +0.4
256,784 + +1.3
256,797 + +2.3
256,890 - +0.3
256,909 + -0.5
256,923 + -0.5
256,927 + -0.9
256,935 + -1.4
256,940 + -1.8
257,059 + +1.1
257,070 - +0.7
257,073 + +0.7
257,079 + +1.3
257,090 - +0.3
257,202 - +2.0
257,211 + -1.5
257,214 - +0.2
257,219 + +0.9
257,237 + +0.9
257,240 - +0.1
257,368 + -0.9
258,247 - 11172 mRNA_2804 0.55 +0.1
258,677 - 11172 mRNA_2804 0.84 +0.6
258,701 - 11172 mRNA_2804 0.86 -0.2
258,812 + -1.3
258,814 - -1.8
258,820 + +2.6
259,091 - +2.0
259,096 - +0.6
259,100 + +1.9
259,116 - -0.2
259,128 + +0.4
259,146 + +2.1
259,151 - +1.7
259,203 + +1.0
259,255 - -0.0
259,283 + +0.8

Or see this region's nucleotide sequence