Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2812

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11179 and 11180 are separated by 682 nucleotides11180 and 11181 are separated by 479 nucleotides mRNA_2811: 11179 - Hypothetical Protein, at 280,492 to 281,442 11179 mRNA_2812: 11180 - Hypothetical Protein, at 282,125 to 283,432 11180 mRNA_2813: 11181 - SUPERFAMILY--SSF52047, at 283,912 to 285,183 11181

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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281,340 - 11179 mRNA_2811 0.89 -0.2
281,358 + +0.1
281,798 + +1.9
281,948 + -0.1
282,219 + -0.1
282,243 - -0.4
282,354 - 11180 mRNA_2812 0.18 +0.3
282,486 - 11180 mRNA_2812 0.28 -0.1
282,492 - 11180 mRNA_2812 0.28 +0.5
282,492 + 11180 mRNA_2812 0.28 -0.6
282,511 + 11180 mRNA_2812 0.30 +0.3
282,552 + 11180 mRNA_2812 0.33 -1.4
282,665 + 11180 mRNA_2812 0.41 +0.8
282,669 - 11180 mRNA_2812 0.42 +0.5
282,960 + 11180 mRNA_2812 0.64 +0.6
283,099 + 11180 mRNA_2812 0.74 -2.7
283,289 - 11180 mRNA_2812 0.89 +0.4
283,378 + +0.1
283,428 + +2.8
283,530 - +0.6
283,547 - +0.4

Or see this region's nucleotide sequence