Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2852

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11219 and 11220 are separated by 270 nucleotides11220 and 11221 are separated by 356 nucleotides mRNA_2851: 11219 - SUPERFAMILY--SSF52047, at 363,401 to 364,630 11219 mRNA_2852: 11220 - K01164 POP1 ribonuclease P/MRP protein subunit POP1, at 364,901 to 367,915 11220 mRNA_2853: 11221 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 368,272 to 370,458 11221

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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364,108 + 11219 mRNA_2851 0.57 -1.7
364,118 - 11219 mRNA_2851 0.58 -1.3
364,241 - 11219 mRNA_2851 0.68 -0.1
364,246 + 11219 mRNA_2851 0.69 +0.1
364,351 - 11219 mRNA_2851 0.77 -0.1
364,375 + 11219 mRNA_2851 0.79 +0.5
364,380 - 11219 mRNA_2851 0.80 -0.9
364,515 - -0.4
364,606 + +0.9
364,669 + +0.3
364,807 - -0.7
364,809 - -0.8
364,811 - -0.4
364,820 - +0.3
364,831 + -0.4
364,924 - -0.6
368,080 - -0.4
368,170 + +0.9
368,204 + +0.4
368,254 - -0.5
368,310 + +2.2
368,324 - -0.3
368,456 - +2.9
368,459 - +0.3
368,622 - 11221 mRNA_2853 0.16 -0.2
368,643 - 11221 mRNA_2853 0.17 +0.9
368,659 + 11221 mRNA_2853 0.18 +0.8

Or see this region's nucleotide sequence