Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2901

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11268 and 11269 are separated by 671 nucleotides11269 and 11270 are separated by 683 nucleotides mRNA_2900: 11268 - BLAST pyridoxamine-phosphate oxidase [Moniliophthora ro..., at 493,675 to 494,245 11268 mRNA_2901: 11269 - KOG1289 Amino acid transporters, at 494,917 to 497,480 11269 mRNA_2902: 11270 - K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3, at 498,164 to 500,409 11270

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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494,113 + 11268 mRNA_2900 0.77 -1.8
494,367 + +0.4
494,433 + -0.1
494,489 + +0.7
494,513 + +1.0
494,547 + +0.1
494,604 - -0.5
494,604 - -0.9
494,635 - +2.4
494,646 + +0.3
494,651 + +0.1
494,655 + +1.4
494,655 - +0.5
494,656 + +1.2
494,684 + -2.1
494,684 - +0.1
494,687 - -0.2
494,692 - -0.6
494,699 - +1.6
494,700 - -0.6
494,701 + +0.7
494,717 + -0.0
494,722 - +0.8
494,816 + +0.3
494,818 - +0.1
494,837 - -0.7
494,851 - +0.2
494,861 + +0.3
494,874 + +2.3
494,927 - -0.3
494,988 - -1.2
495,011 - -1.2
495,016 - +1.6
495,052 + -1.6
495,129 - +0.3
495,162 - -0.3
495,276 + 11269 mRNA_2901 0.14 +0.9
495,336 + 11269 mRNA_2901 0.16 +0.2
495,578 - 11269 mRNA_2901 0.26 +1.2
495,745 + 11269 mRNA_2901 0.32 +1.2
495,778 - 11269 mRNA_2901 0.34 -0.7
496,459 - 11269 mRNA_2901 0.60 +1.9
496,502 - 11269 mRNA_2901 0.62 -0.8
496,591 + 11269 mRNA_2901 0.65 +1.2
496,602 - 11269 mRNA_2901 0.66 -0.3
496,713 - 11269 mRNA_2901 0.70 -1.6
496,727 + 11269 mRNA_2901 0.71 -0.3
496,786 - 11269 mRNA_2901 0.73 -0.4
497,060 + 11269 mRNA_2901 0.84 -0.6
497,175 - 11269 mRNA_2901 0.88 -0.6
497,180 + 11269 mRNA_2901 0.88 +0.4
497,457 - -0.1
497,725 + +0.9
497,886 + -0.9
497,917 + +1.0
497,935 + +0.2
497,999 - -0.6
498,064 - -1.0
498,101 - -0.2
498,191 - +0.3
498,232 - -0.0

Or see this region's nucleotide sequence