Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2910

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11277 and 11278 are separated by 220 nucleotides11278 and 11279 are separated by 149 nucleotides mRNA_2909: 11277 - Hypothetical Protein, at 515,453 to 516,872 11277 mRNA_2910: 11278 - K03657 uvrD, pcrA DNA helicase II / ATP-dependent DNA helicase PcrA, at 517,093 to 520,320 11278 mRNA_2911: 11279 - BLAST ATP-dependent DNA helicase [Trichosporon asahii v..., at 520,470 to 521,587 11279

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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516,147 + 11277 mRNA_2909 0.49 +0.3
516,596 - 11277 mRNA_2909 0.80 -0.3
516,762 - +1.1
516,767 - +0.1
516,902 - -0.6
516,904 + +1.1
516,930 + -0.8
516,935 - +2.1
516,951 + -0.3
517,238 + +0.2
517,251 + -1.0
517,415 + +0.4
517,636 + 11278 mRNA_2910 0.17 +1.1
517,659 + 11278 mRNA_2910 0.18 -0.1
517,667 + 11278 mRNA_2910 0.18 +0.3
517,952 + 11278 mRNA_2910 0.27 +0.6
517,952 + 11278 mRNA_2910 0.27 +1.0
518,267 + 11278 mRNA_2910 0.36 +0.7
518,270 + 11278 mRNA_2910 0.36 -0.2
518,510 - 11278 mRNA_2910 0.44 -0.0
518,629 - 11278 mRNA_2910 0.48 +1.6
518,659 - 11278 mRNA_2910 0.49 +0.5
518,680 + 11278 mRNA_2910 0.49 +0.3
518,681 - 11278 mRNA_2910 0.49 +2.0
519,237 + 11278 mRNA_2910 0.66 +1.1
519,499 + 11278 mRNA_2910 0.75 +1.0
519,797 - 11278 mRNA_2910 0.84 -0.1
519,810 + 11278 mRNA_2910 0.84 -0.2
519,974 + 11278 mRNA_2910 0.89 -1.2
520,081 + +2.1
520,093 - -0.7
520,093 - -1.1
520,102 + -0.7

Or see this region's nucleotide sequence