Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2925

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11292 and 11293 are separated by 436 nucleotides11293 and 11294 are separated by 65 nucleotides mRNA_2924: 11292 - K11663 ZNHIT1, VPS71 zinc finger HIT domain-containing protein 1, at 569,780 to 570,412 11292 mRNA_2925: 11293 - K03030 PSMD14, RPN11, POH1 26S proteasome regulatory subunit N11, at 570,849 to 571,975 11293 mRNA_2926: 11294 - Hypothetical Protein, at 572,041 to 573,157 11294

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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570,474 + +0.9
570,518 + +1.1
570,518 + +0.9
571,975 + +1.0
571,986 + +1.2
572,295 + 11294 mRNA_2926 0.23 +1.1
572,436 + 11294 mRNA_2926 0.35 +0.4
572,444 - 11294 mRNA_2926 0.36 -0.2
572,570 + 11294 mRNA_2926 0.47 +0.2
572,581 - 11294 mRNA_2926 0.48 -0.5
572,865 - 11294 mRNA_2926 0.74 +0.6
572,876 + 11294 mRNA_2926 0.75 +0.4
572,884 + 11294 mRNA_2926 0.75 +0.7
572,952 + 11294 mRNA_2926 0.82 -0.4
572,957 - 11294 mRNA_2926 0.82 -0.8

Or see this region's nucleotide sequence