Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2944

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11312 and 11313 are separated by 257 nucleotides mRNA_2944: 11312 - BLAST Putative CigA protein [Rhizopus microsporus], at 614,601 to 617,050 11312 mRNA_2945: 11313 - K15175 CDC73 parafibromin, at 617,308 to 618,975 11313

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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613,708 - -2.4
613,719 - +0.9
613,786 - -0.2
613,787 + +0.7
613,787 + -1.0
613,788 + -0.1
613,805 - +0.7
613,816 - -0.4
613,821 + -0.1
613,822 + +0.7
613,885 - +0.4
613,997 + +1.8
614,029 - +0.2
614,044 + -1.9
614,053 - -0.8
614,054 + -0.7
614,055 + -0.1
614,071 + +0.9
614,072 + -0.4
614,072 + +0.9
614,072 - -0.5
614,073 - -0.3
614,076 - -0.8
614,076 - +0.2
614,078 - -0.3
614,084 - +0.3
614,101 - -1.3
614,101 + +0.3
614,101 + +0.2
614,103 - -0.8
614,104 - -0.2
614,105 - +0.2
614,109 - -0.5
614,408 + +0.3
614,549 + -0.0
614,666 - +0.7
614,816 - -0.1
615,280 + 11312 mRNA_2944 0.28 +1.4
615,672 - 11312 mRNA_2944 0.44 +0.1
615,834 + 11312 mRNA_2944 0.50 +2.0
616,541 - 11312 mRNA_2944 0.79 +1.5
616,549 - 11312 mRNA_2944 0.80 -0.5
616,565 - 11312 mRNA_2944 0.80 +0.9
616,845 + -3.1
616,851 - -1.2
617,103 - +2.0
617,167 - +2.3
617,178 + +1.5
617,181 + +0.3
617,275 - -0.6
617,327 - -0.2

Or see this region's nucleotide sequence