Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2954

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2954: 11322 - HMMPfam-Glycosyl hydrolase catalytic core-PF11790, at 640,815 to 641,841 11322

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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639,815 - +0.4
639,855 - +0.8
639,922 - +1.1
640,129 - +0.4
640,412 + -0.7
640,457 + +2.7
640,481 - +3.0
640,512 - +0.1
640,517 - +0.8
640,517 + -0.1
640,521 - +0.1
640,535 - +0.6
640,539 + -0.4
640,539 + +1.1
640,542 - +0.6
640,553 - +1.5
640,554 + +1.0
640,573 - +0.3
640,585 - +0.9
640,592 + +0.2
640,606 - +0.7
640,616 - -0.4
640,616 - -0.3
640,622 - -1.3
640,622 - +0.4
640,623 + -1.0
640,625 + -0.1
640,626 - -0.5
640,627 + +0.3
640,627 + -0.2
640,631 + -0.1
640,631 + +0.7
640,633 - -0.5
640,638 - -0.6
640,640 - -0.8
640,641 + +1.4
640,644 + -0.1
640,665 + +2.0
640,666 - +1.0
640,667 - -0.8
640,669 + +1.1
640,688 + +1.0
640,691 + +0.1
640,691 - +0.5
640,692 - +0.1
640,693 + -0.1
640,693 - +0.9
640,709 + -0.3
640,714 - +0.5
640,717 + +0.5
640,718 + -1.5
640,718 - +0.1
640,721 + -1.1
640,721 + +1.6
640,721 - +0.1
640,725 + +1.2
640,732 - +0.5
640,737 - +1.6
640,763 - +1.5
640,763 + -0.0
640,763 + +0.2
640,763 + +1.2
640,891 + -0.2
640,913 + +1.5
640,917 + -0.2
641,197 + 11322 mRNA_2954 0.37 +0.9
641,203 - 11322 mRNA_2954 0.38 -0.2
641,499 - 11322 mRNA_2954 0.67 -0.8
641,596 + 11322 mRNA_2954 0.76 +0.8
641,608 - 11322 mRNA_2954 0.77 +0.4
641,952 + +0.4
641,987 + -1.3
642,058 - -1.8
642,066 - +2.8
642,108 + +0.1
642,177 - -0.6
642,603 + +1.1
642,624 + -0.2
642,627 - +1.0

Or see this region's nucleotide sequence