Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2976

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11343 and 11344 are separated by 279 nucleotides11344 and 11345 are separated by 656 nucleotides mRNA_2975: 11343 - KOG3072 Long chain fatty acid elongase, at 693,422 to 694,637 11343 mRNA_2976: 11344 - KOG2592 Tumor differentially expressed (TDE) protein, at 694,917 to 696,801 11344 mRNA_2977: 11345 - K05758 ARPC2 actin related protein 2/3 complex, subunit 2, at 697,458 to 698,969 11345

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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694,167 + 11343 mRNA_2975 0.61 +0.2
694,224 + 11343 mRNA_2975 0.66 -0.2
694,469 - 11343 mRNA_2975 0.86 +2.0
694,567 + -2.7
694,615 - +0.2
694,735 + +0.7
694,738 + -0.4
694,813 - +0.6
695,016 - +1.7
695,025 + +0.0
695,041 - -0.1
695,097 + -2.2
695,607 - 11344 mRNA_2976 0.37 -0.0
695,618 - 11344 mRNA_2976 0.37 +0.5
695,743 - 11344 mRNA_2976 0.44 -1.0
695,780 + 11344 mRNA_2976 0.46 +0.5
695,826 - 11344 mRNA_2976 0.48 +0.0
695,931 + 11344 mRNA_2976 0.54 -0.9
695,935 - 11344 mRNA_2976 0.54 -1.0
695,950 + 11344 mRNA_2976 0.55 +0.5
696,043 - 11344 mRNA_2976 0.60 -0.8
696,957 - -0.1
697,009 - -0.1
697,245 - +0.2
697,251 + -4.4
697,255 - +0.9
697,258 + -0.3
697,259 - +3.3
697,261 + +2.0
697,267 + +1.5

Or see this region's nucleotide sequence