Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3031

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11398 and 11399 are separated by 471 nucleotides11399 and 11400 are separated by 433 nucleotides mRNA_3030: 11398 - Hypothetical Protein, at 137,392 to 137,958 11398 mRNA_3031: 11399 - KOG0527 HMG-box transcription factor, at 138,430 to 140,039 11399 mRNA_3032: 11400 - K09489 HSPA4 heat shock 70kDa protein 4, at 140,473 to 143,328 11400

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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137,467 - 11398 mRNA_3030 0.13 -1.2
137,521 - 11398 mRNA_3030 0.23 +0.4
137,566 - 11398 mRNA_3030 0.31 -0.4
137,864 - 11398 mRNA_3030 0.83 +0.0
137,872 - 11398 mRNA_3030 0.85 +1.1
137,882 - 11398 mRNA_3030 0.86 +0.2
137,918 + +0.3
138,012 - -0.7
139,054 - 11399 mRNA_3031 0.39 -0.4
139,203 + 11399 mRNA_3031 0.48 +0.4
139,220 - 11399 mRNA_3031 0.49 +0.3
139,230 - 11399 mRNA_3031 0.50 -0.4
139,261 + 11399 mRNA_3031 0.52 -0.6
139,533 + 11399 mRNA_3031 0.69 +0.8
140,087 - +1.9
140,093 - -0.3
140,254 + -0.2
140,375 + +0.3

Or see this region's nucleotide sequence