Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3066

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11433 and 11434 are separated by 294 nucleotides mRNA_3065: 11433 - Hypothetical Protein, at 230,805 to 232,101 11433 mRNA_3066: 11434 - K13449 PR1 pathogenesis-related protein 1, at 232,396 to 233,465 11434

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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231,459 - 11433 mRNA_3065 0.50 +0.1
231,461 - 11433 mRNA_3065 0.51 +0.7
231,465 - 11433 mRNA_3065 0.51 +0.2
231,467 + 11433 mRNA_3065 0.51 -1.3
231,468 + 11433 mRNA_3065 0.51 +0.3
231,489 + 11433 mRNA_3065 0.53 -0.1
231,592 + 11433 mRNA_3065 0.61 +0.4
231,632 + 11433 mRNA_3065 0.64 +0.9
231,752 + 11433 mRNA_3065 0.73 +0.2
231,758 + 11433 mRNA_3065 0.73 -0.3
231,764 + 11433 mRNA_3065 0.74 -0.2
231,771 + 11433 mRNA_3065 0.74 -0.1
231,778 - 11433 mRNA_3065 0.75 -0.0
231,780 - 11433 mRNA_3065 0.75 -0.2
231,783 + 11433 mRNA_3065 0.75 +1.6
231,911 - 11433 mRNA_3065 0.85 +0.9
231,924 + 11433 mRNA_3065 0.86 -0.6
231,927 + 11433 mRNA_3065 0.87 +0.8
231,948 + 11433 mRNA_3065 0.88 -1.1
232,071 - -0.3
232,072 - +1.1
232,086 + -0.5
232,178 - +0.7
232,205 - +0.5
232,227 - -1.1
232,384 - +0.9
232,516 - 11434 mRNA_3066 0.11 -0.1
232,656 + 11434 mRNA_3066 0.24 +0.4
232,659 - 11434 mRNA_3066 0.25 +1.0
232,951 - 11434 mRNA_3066 0.52 -0.5
232,952 - 11434 mRNA_3066 0.52 -0.3
233,123 - 11434 mRNA_3066 0.68 +0.9
233,207 - 11434 mRNA_3066 0.76 +2.0
233,430 + +0.7
233,546 - +2.2
233,573 - -0.6
233,713 + -0.8
233,788 - +0.3
233,817 + -1.1
233,827 + -0.3
233,828 - +0.1
233,829 - -1.3
233,837 + -0.3
233,844 + +1.1
233,853 - +0.1
233,854 + +0.4
233,865 - +0.4
233,865 - +1.1
233,899 + +0.2
233,937 - +2.2
233,940 - -1.0
233,943 + +2.4
233,947 - +1.2
233,948 - +1.4
233,949 - -1.4
233,951 - +0.9
233,952 - +0.6
233,956 - +1.7
233,957 + -1.5
233,966 - +0.2
233,968 - +1.0
233,968 - -0.5
233,969 - -0.8
233,971 + -0.3
233,971 + -0.7
233,972 - +0.5
233,979 - -0.1
233,986 + +0.7
234,005 - -2.3
234,010 + +0.5
234,013 + +2.9
234,018 - +0.5
234,021 + +1.6
234,024 - +0.2
234,035 - -0.0
234,069 - +0.3
234,069 - +0.3
234,080 - +0.4
234,082 - +0.4
234,086 - +0.1
234,095 - +1.4
234,097 - +0.4
234,109 + +0.3
234,109 - +0.8
234,118 - +0.7
234,121 + +1.0
234,126 - -0.1
234,132 - +0.7
234,148 - -0.3
234,157 + -0.1
234,250 - -0.2
234,271 - +2.4
234,314 + +0.3
234,413 - +0.6
234,424 - -0.2
234,453 - +0.5
234,455 - +0.5

Or see this region's nucleotide sequence