Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3157

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11524 and 11525 are separated by 97 nucleotides11525 and 11526 are separated by 338 nucleotides mRNA_3156: 11524 - K12662 PRPF4, PRP4 U4/U6 small nuclear ribonucleoprotein PRP4, at 448,077 to 450,028 11524 mRNA_3157: 11525 - K00942 E2.7.4.8, gmk guanylate kinase, at 450,126 to 451,000 11525 mRNA_3158: 11526 - KOG0453 Aconitase/homoaconitase (aconitase superfamily), at 451,339 to 452,325 11526

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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449,150 - 11524 mRNA_3156 0.55 +1.1
449,221 - 11524 mRNA_3156 0.59 +0.2
449,447 + 11524 mRNA_3156 0.70 +0.5
449,481 + 11524 mRNA_3156 0.72 -0.3
449,627 - 11524 mRNA_3156 0.79 -0.1
450,031 + +0.5
450,046 + -2.5
450,320 + 11525 mRNA_3157 0.22 +0.7
450,483 + 11525 mRNA_3157 0.41 +2.7
450,606 - 11525 mRNA_3157 0.55 +0.7
450,608 - 11525 mRNA_3157 0.55 +0.6
450,614 + 11525 mRNA_3157 0.56 +0.8
450,633 + 11525 mRNA_3157 0.58 -0.4
450,768 + 11525 mRNA_3157 0.73 +0.4
450,770 + 11525 mRNA_3157 0.74 +2.2
450,912 + 11525 mRNA_3157 0.90 -0.1
450,986 + +0.2
451,051 - +0.3
451,058 + +0.2
451,060 - -2.3
451,063 + +0.7
451,063 + +0.9
451,064 + -2.4
451,066 + +1.0
451,069 - +1.9
451,075 + -1.1
451,082 + -0.6
451,089 - -0.7
451,091 + -1.1
451,092 + -0.6
451,092 + -1.2
451,232 + +0.9
451,234 + +0.3
451,246 - +0.7
451,382 + -0.6
451,401 + -0.3
451,523 + 11526 mRNA_3158 0.19 +1.9
451,674 + 11526 mRNA_3158 0.34 +1.8
451,679 + 11526 mRNA_3158 0.34 +0.8
451,710 + 11526 mRNA_3158 0.38 -0.1
451,820 + 11526 mRNA_3158 0.49 +0.9
451,825 + 11526 mRNA_3158 0.49 +0.5
451,839 + 11526 mRNA_3158 0.51 -0.4
451,849 + 11526 mRNA_3158 0.52 -0.0
451,953 - 11526 mRNA_3158 0.62 +0.7
451,962 + 11526 mRNA_3158 0.63 -1.7
451,963 - 11526 mRNA_3158 0.63 +0.2
451,972 - 11526 mRNA_3158 0.64 +0.2
451,973 + 11526 mRNA_3158 0.64 -0.7
451,977 - 11526 mRNA_3158 0.65 +0.3

Or see this region's nucleotide sequence