Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
12 + -0.6
12 + +1.4
15 + -0.1
16 + +1.2
18 + -0.1
22 + +0.7
25 + -1.9
57 - -1.0
61 - +0.9
62 + -0.9
62 + +0.1
66 + +0.5
72 + +0.1
72 + -0.8
72 + -0.4
75 + -0.5
78 - -0.3
105 + +1.5
110 - -1.2
114 + +0.4
115 + +0.5
118 + +0.4
122 + +0.7
122 - +0.1
124 + +1.5
135 + +0.6
147 + +1.8
157 + +2.0
161 + +0.4
168 + +1.7
174 + +0.2
177 - -0.2
228 + +0.1
247 + -0.3
252 - +0.9
253 - -0.8
255 + +1.0
258 + -0.5
264 - +0.9
269 + +0.3
269 - +0.5
274 + -0.1
275 - +0.8
277 + -3.2
280 + +2.0
280 + -0.9
283 - +1.2
285 - -0.1
287 + -0.1
287 + +0.2
288 + +1.4
292 - +0.5
293 + -0.1
298 + +0.7
305 - +0.1
314 + +1.6
320 + +2.1
368 + +1.5
370 - -1.3
372 + -0.3
382 + +2.2
384 + -0.0
391 + +1.0
391 - +1.3
397 + +1.2
397 - +1.5
402 + -1.0
405 + -0.2
423 - +1.6
430 + +1.8
440 + +2.6
446 + +4.1
470 + -0.3
524 + +1.5
532 + -0.1
545 - -0.0
557 + -0.0
569 + +0.2
570 - -0.3
583 + +0.6
584 + +0.4
603 - +0.6
603 + -0.5
634 - 11537 mRNA_3169 0.11 +0.1
636 + 11537 mRNA_3169 0.11 -1.1
646 + 11537 mRNA_3169 0.12 -0.1
661 + 11537 mRNA_3169 0.13 +0.6
667 + 11537 mRNA_3169 0.14 +0.6
698 + 11537 mRNA_3169 0.17 +0.8
704 - 11537 mRNA_3169 0.18 +1.0
705 - 11537 mRNA_3169 0.18 +1.4
721 - 11537 mRNA_3169 0.19 +0.0
725 + 11537 mRNA_3169 0.20 +1.2
738 - 11537 mRNA_3169 0.21 +0.4
849 + 11537 mRNA_3169 0.32 +0.5
871 + 11537 mRNA_3169 0.34 -0.9
883 + 11537 mRNA_3169 0.35 -0.0
894 + 11537 mRNA_3169 0.37 +0.2
895 + 11537 mRNA_3169 0.37 +0.7
922 + 11537 mRNA_3169 0.39 +0.5
965 - 11537 mRNA_3169 0.44 -0.2
1,012 - 11537 mRNA_3169 0.48 +1.1
1,026 + 11537 mRNA_3169 0.50 +1.5
1,026 + 11537 mRNA_3169 0.50 +0.7
1,105 + 11537 mRNA_3169 0.58 -0.8
1,123 + 11537 mRNA_3169 0.60 -0.0
1,141 + 11537 mRNA_3169 0.61 -0.3
1,142 + 11537 mRNA_3169 0.61 +0.3
1,165 + 11537 mRNA_3169 0.64 -0.8
1,174 - 11537 mRNA_3169 0.65 -0.8
1,174 + 11537 mRNA_3169 0.65 +0.0
1,259 + 11537 mRNA_3169 0.73 +0.6
1,265 + 11537 mRNA_3169 0.74 +0.0
1,268 + 11537 mRNA_3169 0.74 +1.0
1,269 - 11537 mRNA_3169 0.74 +0.5
1,288 - 11537 mRNA_3169 0.76 +1.1
1,297 + 11537 mRNA_3169 0.77 -0.3
1,303 - 11537 mRNA_3169 0.78 -1.0
1,399 + 11537 mRNA_3169 0.87 +1.3
1,412 - 11537 mRNA_3169 0.88 +0.2
1,419 - 11537 mRNA_3169 0.89 -0.3
1,423 - 11537 mRNA_3169 0.90 -4.7
1,429 - +2.3
1,453 + -0.3
1,459 + +0.2
1,459 + -0.8
1,460 - +0.3
1,461 + -0.2
1,462 + -0.0
1,467 + -0.1
1,470 - -0.4
1,474 - +0.2
1,485 + -1.3
1,520 + -2.0
1,523 + +1.8
1,531 - +0.0
1,537 + +0.0
1,541 + +0.1
1,562 + +0.8
1,567 + +0.2
1,572 + +0.1
1,582 - -0.4
1,584 - -0.6
1,589 + -0.2
1,596 - +0.9
1,601 - +0.0
1,602 + -1.3
1,605 + -2.5
1,609 + -1.3
1,616 + -0.0
1,636 + +1.5
1,654 + +0.1
1,656 - -0.1
1,666 + +0.0
1,675 - +0.7
1,682 - +0.1
1,697 - -0.1
1,709 + +1.9
1,709 - +0.3
1,711 + +0.6
1,718 - -3.3
1,719 + -0.3
1,722 - +0.1
1,723 + +0.3
1,725 - -1.3
1,725 - -0.4
1,727 + -0.9
1,730 + +0.3
1,731 + +1.3
1,732 + -0.1
1,732 + +0.3
1,734 + -0.6
1,734 + +0.3
1,734 + +0.5
1,739 - -0.1
1,740 + -0.0
1,744 - +0.6
1,747 + +0.0
1,749 + +1.1
1,759 + -0.7
1,759 + +0.3
1,759 + +0.4
1,761 + +0.0
1,763 + +1.7
1,765 + +0.2
1,767 + +0.8
1,769 + +0.8
1,772 + +1.9
1,772 + +0.8
1,774 + -0.7
1,774 + +0.9
1,775 + +1.8
1,776 - +0.6
1,776 + -2.5
1,777 + -0.6
1,778 + +1.2
1,778 - +0.4
1,781 - +1.6
1,783 - +1.0
1,783 - +0.3
1,783 - +0.8
1,783 - -0.5
1,784 + +0.8
1,789 + +0.8
1,789 - -0.7
1,791 + +0.7
1,792 + -0.6
1,793 + +0.3
1,795 + -0.6
1,796 + -0.4
1,796 - +0.1
1,798 + +0.3
1,800 + -0.2
1,801 + +1.5
1,805 + +0.1
1,805 + -1.6
1,807 + -0.8
1,813 - +0.1
1,814 + -0.5
1,814 + +2.3
1,818 - -1.0
1,851 - -0.9
1,874 + +0.8
1,881 - -0.5
1,885 - -0.0
1,891 - -1.1
1,896 - +1.9
1,912 + +0.5
1,912 + -0.6
1,914 - -1.0
1,916 - -1.7
1,917 - +0.1
1,919 + -0.0
1,922 - +0.8
1,923 - -1.0
1,934 - +0.9
1,935 + +1.1
1,938 - -0.1
1,938 - +0.3
1,940 - -2.0
1,941 + -0.1
1,941 + +1.4
1,942 + -0.8
1,943 - +0.1
1,944 + +1.1
1,944 - +1.1
1,945 - +1.0
1,945 + +0.6
1,946 - -0.6
1,947 + +1.1
1,960 - -0.2
1,968 + -1.4
1,980 + +0.4
2,015 + +1.1
2,067 - -0.0
2,081 - +2.2
2,091 + -0.8
2,220 + +1.5
2,229 - -0.4
2,235 - -0.9
2,237 - -0.3
2,242 + +0.1
2,242 - +0.1
2,245 - +1.5
2,248 - +0.1
2,251 + +1.5
2,254 - -0.3
2,261 + +0.9
2,262 - +2.4
2,266 + +0.1
2,268 + +0.3
2,400 + 11538 mRNA_3170 0.21 +0.1
2,401 - 11538 mRNA_3170 0.21 -0.2
2,404 + 11538 mRNA_3170 0.22 -0.9
2,414 + 11538 mRNA_3170 0.23 -2.2
2,420 - 11538 mRNA_3170 0.23 +0.0
2,439 + 11538 mRNA_3170 0.25 -1.2
2,446 + 11538 mRNA_3170 0.26 +0.2
2,470 - 11538 mRNA_3170 0.28 +0.9
2,516 - 11538 mRNA_3170 0.32 -1.6

Or see this region's nucleotide sequence