Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3188

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11555 and 11556 are separated by 271 nucleotides11556 and 11557 are separated by 829 nucleotides mRNA_3187: 11555 - BLAST Protein disulfide-isomerase erp38 [Hypsizygus marmoreus], at 44,438 to 45,168 11555 mRNA_3188: 11556 - Hypothetical Protein, at 45,440 to 45,769 11556 mRNA_3189: 11557 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 46,599 to 47,566 11557

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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44,606 + 11555 mRNA_3187 0.23 -1.6
44,635 + 11555 mRNA_3187 0.27 +1.1
44,751 - 11555 mRNA_3187 0.43 +1.0
44,783 - 11555 mRNA_3187 0.47 +2.8
44,901 - 11555 mRNA_3187 0.63 -0.4
45,028 + 11555 mRNA_3187 0.81 +1.0
45,042 - 11555 mRNA_3187 0.83 +0.1
45,247 + +0.3
45,485 - 11556 mRNA_3188 0.14 +0.8
45,502 + 11556 mRNA_3188 0.19 -0.5
45,506 + 11556 mRNA_3188 0.20 -1.7
45,533 - 11556 mRNA_3188 0.28 +1.2
45,541 + 11556 mRNA_3188 0.31 +1.5
45,630 + 11556 mRNA_3188 0.58 -0.3
45,652 - 11556 mRNA_3188 0.64 +1.0
45,778 - +0.2
45,808 + -3.2
45,819 - +0.1
45,822 - +0.2
45,823 + -0.5
45,897 + -0.2
45,907 + -1.5
45,919 + +0.1
45,919 + -0.4
46,029 - +0.2
46,039 + +0.2
46,063 - +0.2
46,406 + -0.3
46,487 - +0.3
46,632 - +0.4
46,674 - -0.3

Or see this region's nucleotide sequence