Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3216

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11583 and 11584 are separated by 460 nucleotides mRNA_3215: 11583 - K17103 CHO1, pssA CDP-diacylglycerol---serine O-phosphatidyltransferase, at 110,757 to 112,157 11583 mRNA_3216: 11584 - K12881 THOC4, ALY THO complex subunit 4, at 112,618 to 114,116 11584

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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112,251 - +0.4
112,374 + +1.8
112,390 + +0.5
112,539 - +1.1
112,543 - +0.6
112,812 - 11584 mRNA_3216 0.13 +2.6
112,834 - 11584 mRNA_3216 0.14 -1.5
112,850 - 11584 mRNA_3216 0.15 -1.2
113,424 + 11584 mRNA_3216 0.54 +0.0
113,556 + 11584 mRNA_3216 0.63 +0.3
114,323 - -0.4
114,448 + +1.1
114,561 + -0.4
114,574 + +0.7
114,759 - +0.0
114,759 - +0.7
114,929 - +0.4
114,932 + +3.0
114,938 + +0.5
114,987 + +0.5
115,069 - -0.2
115,071 - -0.1
115,072 + +0.3
115,086 + -0.4
115,088 + -0.7
115,096 + +2.2
115,101 - +1.0
115,102 + +1.0
115,103 - -0.1

Or see this region's nucleotide sequence