Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3270

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11637 and 11638 are separated by 452 nucleotides11638 and 11639 are separated by 613 nucleotides mRNA_3269: 11637 - Hypothetical Protein, at 251,317 to 251,625 11637 mRNA_3270: 11638 - Hypothetical Protein, at 252,078 to 253,678 11638 mRNA_3271: 11639 - K07126 K07126 uncharacterized protein, at 254,292 to 257,031 11639

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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251,168 - +0.7
251,417 + 11637 mRNA_3269 0.32 +0.0
251,532 - 11637 mRNA_3269 0.70 -0.5
251,798 - -0.3
251,967 + +0.3
252,103 - +1.1
252,133 + +1.4
252,230 - +0.4
252,506 + 11638 mRNA_3270 0.27 -0.4
252,559 - 11638 mRNA_3270 0.30 +0.4
253,322 + 11638 mRNA_3270 0.78 -0.6
253,592 + +1.3
253,742 + -1.5
253,752 + +0.9
253,859 + -0.4
254,012 - +0.1
254,028 - -1.2
254,034 + -0.4
254,036 - +1.1
254,039 - +2.3
254,046 - -0.1
254,051 - +0.3
254,058 + -1.1
254,179 - +0.2
254,475 - +0.2
254,476 + -1.8
254,616 - 11639 mRNA_3271 0.12 +0.9
254,621 + 11639 mRNA_3271 0.12 +0.3
254,624 - 11639 mRNA_3271 0.12 +0.5

Or see this region's nucleotide sequence